cis; GGGCCTA


Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
GGGCC   SORLIP2AT [ref]

CEG profile for position preference


CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GGGCCTA

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GO IDterm-Log(p)number of
{A; genes in a GO}
numver of
{B; genes with this heptamer}
{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GGGCCTA.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.65At1g71260expressed protein WHIRLY
0.62At4g3093050S ribosomal protein L21, mitochondrial (RPL21M) ((WRKY32)) WRKY
-0.59At3g52800zinc finger (AN1-like) family protein C2H2
0.57At3g52910expressed protein GRF
0.56At1g14410DNA-binding protein-related WHIRLY
-0.54At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
-0.54At5g66070zinc finger (C3HC4-type RING finger) family protein C3H
-0.54At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
0.54At3g57150dyskerin, putative / nucleolar protein NAP57, putative ((NAP57)) NAC
0.52At5g16070chaperonin, putative TCP
-0.52At1g28370ERF domain protein 11 (ERF11) AP2-EREBP
-0.52At1g08320bZIP family transcription factor bZIP
0.50At3g22780CXC domain protein (TSO1) ((TSO1)) CPP
-0.50At5g49520WRKY family transcription factor ((WRKY48)) WRKY
-0.49At4g17230scarecrow-like transcription factor 13 (SCL13) GRAS

link to other 304 cis elements in ATTED

similar seq.
GGGCCTA
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TAGGCCC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GGGCCTA1.000.0794
TGGGCCT0.980.1096
TTGGGCC0.970.0998
ATGGGCC0.970.0987
GGCCCAA0.960.0962
TTGGGCT0.960.0780
TATGGGC0.960.0792
AAGGCCC0.960.0884
AATGGGC0.960.0988
AGGCCCA0.960.1186