cis; CCCTGGC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CCCTGGC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CCCTGGC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.46At4g16430basic helix-loop-helix (bHLH) family protein BHLH
0.46At5g06960bZIP family transcription factor (OBF5) ((OBF5, TGA5)) bZIP
-0.46At3g58120bZIP transcription factor family protein bZIP
-0.45At5g08330TCP family transcription factor, putative TCP
-0.44At1g05805basic helix-loop-helix (bHLH) family protein BHLH
0.44At1g03040basic helix-loop-helix (bHLH) family protein BHLH
0.44At3g11200PHD finger family protein Alfin-like
-0.43At1g68190zinc finger (B-box type) family protein C2C2-CO-like
0.42At5g18830squamosa promoter-binding protein-like 7 (SPL7) ((SPL7)) SBP
0.42At5g09330no apical meristem (NAM) family protein NAC
0.41At1g50420scarecrow-like transcription factor 3 (SCL3) ((SCL3)) GRAS
0.41At4g24470zinc finger (GATA type) protein ZIM (ZIM) ((ZIM)) C2C2-Gata

link to other 304 cis elements in ATTED

similar seq.
←CCCTGGC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GCCAGGG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CCCTGGC1.000.09153
ACCCGCG0.770.089
CCCGCGG0.770.0814