cis; CGAGCAG

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of CGAGCAG

[Help]
GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of CGAGCAG.

[Help]
correlTFfunction ((alias))*TF family
(link to AGRIS)
0.49At4g18880heat shock transcription factor 21 (HSF21) ((AT-HSFA4A)) HSF
0.49At1g18570myb family transcription factor (MYB51) ((MYB51)) MYB
0.49At5g47220ethylene-responsive element-binding factor 2 (ERF2) ((ERF2)) AP2-EREBP
0.46At2g38470WRKY family transcription factor ((WRKY33)) WRKY
0.45At3g46600scarecrow transcription factor family protein GRAS
0.44At5g49450bZIP family transcription factor bZIP
0.44At3g16720zinc finger (C3HC4-type RING finger) family protein ((ATL2)) C3H
0.44At1g67970heat shock factor protein, putative (HSF5) / heat shock transcription factor, putative (HSTF5) ((AT-HSFA8)) HSF
0.43At2g30250WRKY family transcription factor ((WRKY25)) WRKY
0.42At4g23810WRKY family transcription factor ((WRKY29, WRKY53)) WRKY
0.41At2g23320WRKY family transcription factor ((WRKY15)) WRKY
0.40At2g18670zinc finger (C3HC4-type RING finger) family protein C3H

link to other 304 cis elements in ATTED

similar seq.
←CGAGCAG→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; CTGCTCG
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
CGAGCAG1.000.0719
CCCTGGG0.710.06113
TCTAGAA0.650.1580
CTCTAGA0.630.1083
CTTCTAG0.630.1090
CTCCAGA0.630.0754
TTCTAGA0.630.1188
GCGAAGG0.620.0979
TCTGGAA0.600.0720