[][] ath   AT1G01060 Gene
functional annotation
Function   Homeodomain-like superfamily protein
GO BP
GO:0042754 [list] [network] negative regulation of circadian rhythm  (3 genes)  IMP  
GO:0043433 [list] [network] negative regulation of DNA-binding transcription factor activity  (5 genes)  IMP  
GO:0048574 [list] [network] long-day photoperiodism, flowering  (16 genes)  IGI  
GO:0042752 [list] [network] regulation of circadian rhythm  (57 genes)  IMP  
GO:0007623 [list] [network] circadian rhythm  (111 genes)  IGI  
GO:0009739 [list] [network] response to gibberellin  (154 genes)  IEP  
GO:0009751 [list] [network] response to salicylic acid  (215 genes)  IEP  
GO:0009753 [list] [network] response to jasmonic acid  (222 genes)  IEP  
GO:0009723 [list] [network] response to ethylene  (297 genes)  IEP  
GO:0046686 [list] [network] response to cadmium ion  (346 genes)  IEP  
GO:0009733 [list] [network] response to auxin  (407 genes)  IEP  
GO:0009409 [list] [network] response to cold  (411 genes)  IGI  
GO:0009651 [list] [network] response to salt stress  (485 genes)  IEP  
GO:0009737 [list] [network] response to abscisic acid  (574 genes)  IEP  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  ISS TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IEA ISM  
GO MF
GO:0044212 [list] [network] transcription regulatory region DNA binding  (871 genes)  IDA IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  IDA ISS  
KEGG ath04712 [list] [network] Circadian rhythm - plant (36 genes)
Protein NP_001030924.1  NP_001077437.1  NP_001184882.1  NP_001320627.1  NP_001320628.1  NP_001320629.1  NP_171614.1  NP_849568.1 
BLAST NP_001030924.1  NP_001077437.1  NP_001184882.1  NP_001320627.1  NP_001320628.1  NP_001320629.1  NP_171614.1  NP_849568.1 
Orthologous [Ortholog page] MYB114 (gma)LCL3 (gma)LOC4344703 (osa)LOC11432385 (mtr)LCL4 (gma)LOC100192868 (zma)LOC100250535 (vvi)LCL1 (gma)LOC100281091 (zma)LOC101261662 (sly)LOC103836661 (bra)LOC103844616 (bra)
Subcellular
localization
wolf
nucl 10  (predict for NP_001030924.1)
nucl 10  (predict for NP_001077437.1)
nucl 10  (predict for NP_001184882.1)
nucl 10  (predict for NP_001320627.1)
nucl 10  (predict for NP_001320628.1)
nucl 10  (predict for NP_001320629.1)
nucl 10  (predict for NP_171614.1)
nucl 10  (predict for NP_849568.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001030924.1)
other 8  (predict for NP_001077437.1)
other 6,  mito 3  (predict for NP_001184882.1)
other 8  (predict for NP_001320627.1)
other 6,  mito 3  (predict for NP_001320628.1)
other 8  (predict for NP_001320629.1)
other 8  (predict for NP_171614.1)
other 8  (predict for NP_849568.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
Genes directly connected with LHY on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
21.9 CCA1 circadian clock associated 1 [detail] 819296
16.3 RVE8 Homeodomain-like superfamily protein [detail] 820117
12.2 BBX19 B-box type zinc finger family protein [detail] 830051
11.2 AT4G15430 ERD (early-responsive to dehydration stress) family protein [detail] 827214
8.0 AT5G15950 Adenosylmethionine decarboxylase family protein [detail] 831452
Coexpressed
gene list
[Coexpressed gene list for LHY]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261569_at
261569_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261569_at
261569_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
261569_at
261569_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 839341    
Refseq ID (protein) NP_001030924.1 
NP_001077437.1 
NP_001184882.1 
NP_001320627.1 
NP_001320628.1 
NP_001320629.1 
NP_171614.1 
NP_849568.1 


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