[←][→] ath   At1g01060 Gene
functional annotation
Function   Homeodomain-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0042754 [list] [network] negative regulation of circadian rhythm  (3 genes)  IMP  
GO:0043433 [list] [network] negative regulation of DNA-binding transcription factor activity  (6 genes)  IMP  
GO:0048574 [list] [network] long-day photoperiodism, flowering  (19 genes)  IGI  
GO:0042752 [list] [network] regulation of circadian rhythm  (61 genes)  IMP  
GO:0007623 [list] [network] circadian rhythm  (123 genes)  IGI  
GO:0009409 [list] [network] response to cold  (472 genes)  IGI  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1656 genes)  ISS TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (708 genes)  IDA IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  IDA ISS  
KEGG ath04712 [list] [network] Circadian rhythm - plant (39 genes)
Protein NP_001030924.1  NP_001077437.1  NP_001184882.1  NP_001320627.1  NP_001320628.1  NP_001320629.1  NP_171614.1  NP_849568.1 
BLAST NP_001030924.1  NP_001077437.1  NP_001184882.1  NP_001320627.1  NP_001320628.1  NP_001320629.1  NP_171614.1  NP_849568.1 
Orthologous [Ortholog page] MYB114 (gma)  LCL3 (gma)  LOC4344703 (osa)  LOC7478808 (ppo)  LOC7486811 (ppo)  LOC11432385 (mtr)  LCL4 (gma)  LCL1 (gma)  LOC100682474 (tae)  LOC101261662 (sly)  LOC103836661 (bra)  LOC103844616 (bra)  LOC123147271 (tae)  LOC123167076 (tae)  LOC123407924 (hvu) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001030924.1)
nucl 10  (predict for NP_001077437.1)
nucl 10  (predict for NP_001184882.1)
nucl 10  (predict for NP_001320627.1)
nucl 10  (predict for NP_001320628.1)
nucl 10  (predict for NP_001320629.1)
nucl 10  (predict for NP_171614.1)
nucl 10  (predict for NP_849568.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001030924.1)
other 8  (predict for NP_001077437.1)
other 6,  mito 3  (predict for NP_001184882.1)
other 8  (predict for NP_001320627.1)
other 6,  mito 3  (predict for NP_001320628.1)
other 8  (predict for NP_001320629.1)
other 8  (predict for NP_171614.1)
other 8  (predict for NP_849568.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
ath00270 Cysteine and methionine metabolism 2
ath00330 Arginine and proline metabolism 2
Genes directly connected with LHY on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
22.4 CCA1 circadian clock associated 1 [detail] 819296
16.5 RVE8 Homeodomain-like superfamily protein [detail] 820117
13.3 AT3G54500 agglutinin-like protein [detail] 824615
12.8 BBX19 B-box type zinc finger family protein [detail] 830051
11.0 AT4G15430 ERD (early-responsive to dehydration stress) family protein [detail] 827214
7.5 AT1G26790 Dof-type zinc finger DNA-binding family protein [detail] 839220
7.3 AT5G15950 Adenosylmethionine decarboxylase family protein [detail] 831452
4.6 ABCG22 ABC-2 type transporter family protein [detail] 830541
Coexpressed
gene list		 [Coexpressed gene list for LHY]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261569_at
261569_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261569_at
261569_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261569_at
261569_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839341      
Refseq ID (protein) NP_001030924.1 
NP_001077437.1 
NP_001184882.1 
NP_001320627.1 
NP_001320628.1 
NP_001320629.1 
NP_171614.1 
NP_849568.1 


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