ATTED-II : GeneID search result

[←][→] ath AT2G20180 Gene

functional annotation

Function

phytochrome interacting factor 3-like 5

GO BP

GO:0010161 [list] [network] red light signaling pathway	(10 genes)	IDA
GO:0010100 [list] [network] negative regulation of photomorphogenesis	(13 genes)	IMP
GO:0009959 [list] [network] negative gravitropism	(18 genes)	IMP TAS
GO:0010187 [list] [network] negative regulation of seed germination	(23 genes)	IGI IMP
GO:0006783 [list] [network] heme biosynthetic process	(24 genes)	IMP
GO:0010099 [list] [network] regulation of photomorphogenesis	(34 genes)	TAS
GO:0015995 [list] [network] chlorophyll biosynthetic process	(41 genes)	IMP
GO:0009740 [list] [network] gibberellic acid mediated signaling pathway	(71 genes)	IMP
GO:0010029 [list] [network] regulation of seed germination	(84 genes)	TAS
GO:0006355 [list] [network] regulation of transcription, DNA-templated	(1984 genes)	IMP

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IBA IDA ISM

GO MF

GO:0010313 [list] [network] phytochrome binding	(3 genes)	IDA
GO:0042802 [list] [network] identical protein binding	(288 genes)	IPI
GO:0046983 [list] [network] protein dimerization activity	(570 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1599 genes)	IDA ISS TAS
GO:0003677 [list] [network] DNA binding	(2280 genes)	IDA
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

Protein

NP_001189559.1 NP_001318252.1 NP_001323901.1 NP_001323902.1 NP_001323903.1 NP_001323904.1 NP_001323905.1 NP_849996.1

BLAST

NP_001189559.1 NP_001318252.1 NP_001323901.1 NP_001323902.1 NP_001323903.1 NP_001323904.1 NP_001323905.1 NP_849996.1

Orthologous

[Ortholog page] LOC7459525 (ppo) LOC11419484 (mtr) LOC25484155 (mtr) LOC100264869 (vvi) LOC100788491 (gma) LOC100792121 (gma) LOC100797225 (gma) LOC101260141 (sly) LOC101264668 (sly) LOC102665366 (gma)

Subcellular
localization
wolf

nucl 10	(predict for NP_001189559.1)
nucl 10	(predict for NP_001318252.1)
nucl 10	(predict for NP_001323901.1)
nucl 10	(predict for NP_001323902.1)
nucl 10	(predict for NP_001323903.1)
nucl 10	(predict for NP_001323904.1)
nucl 10	(predict for NP_001323905.1)
nucl 10	(predict for NP_849996.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001189559.1)
other 9	(predict for NP_001318252.1)
other 9	(predict for NP_001323901.1)
other 9	(predict for NP_001323902.1)
other 9	(predict for NP_001323903.1)
other 9	(predict for NP_001323904.1)
other 9	(predict for NP_001323905.1)
other 9	(predict for NP_849996.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00196	Photosynthesis - antenna proteins	5

Genes directly connected with PIL5 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
6.0	PIF4	phytochrome interacting factor 4	[detail]	818903
5.4	AT5G54630	zinc finger protein-like protein	[detail]	835552
4.9	DRB3	dsRNA-binding protein 3	[detail]	822310

Coexpressed
gene list

[Coexpressed gene list for PIL5]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

265584_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

265584_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

265584_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	816538
Refseq ID (protein)	NP_001189559.1
	NP_001318252.1
	NP_001323901.1
	NP_001323902.1
	NP_001323903.1
	NP_001323904.1
	NP_001323905.1
	NP_849996.1

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