ATTED-II : GeneID search result

[←][→] ath AT3G19290 Gene

functional annotation

Function

ABRE binding factor 4

GO BP

GO:1903648 [list] [network] positive regulation of chlorophyll catabolic process	(2 genes)	IMP
GO:1900057 [list] [network] positive regulation of leaf senescence	(16 genes)	IMP
GO:0019760 [list] [network] glucosinolate metabolic process	(111 genes)	IMP
GO:0009738 [list] [network] abscisic acid-activated signaling pathway	(194 genes)	IEA IMP
GO:0009414 [list] [network] response to water deprivation	(361 genes)	IEP
GO:0009651 [list] [network] response to salt stress	(485 genes)	IEP
GO:0045893 [list] [network] positive regulation of transcription, DNA-templated	(495 genes)	IDA
GO:0009737 [list] [network] response to abscisic acid	(574 genes)	IDA IEP
GO:0006355 [list] [network] regulation of transcription, DNA-templated	(1984 genes)	IEA TAS

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IDA ISM

GO MF

GO:0000976 [list] [network] transcription regulatory region sequence-specific DNA binding	(204 genes)	IPI
GO:0044212 [list] [network] transcription regulatory region DNA binding	(871 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1599 genes)	IEA ISS TAS
GO:0003677 [list] [network] DNA binding	(2280 genes)	IEA IPI
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

ath04075 [list] [network] Plant hormone signal transduction (273 genes)

Protein

NP_001154626.1 NP_001189934.1 NP_001326147.1 NP_001326148.1 NP_566629.1

BLAST

NP_001154626.1 NP_001189934.1 NP_001326147.1 NP_001326148.1 NP_566629.1

Orthologous

[Ortholog page] AREB1 (sly) ABF3 (ath) ABF2 (ath) ABF1 (ath) LOC4330838 (osa) LOC4340462 (osa) LOC4345807 (osa) LOC7462880 (ppo) LOC7490036 (ppo) LOC11435200 (mtr) LOC11446220 (mtr) BZIP71 (gma) LOC100216617 (zma) BZIP1 (gma) GRIP55 (vvi) LOC100243434 (vvi) LOC100283578 (zma) LOC100284582 (zma) LOC100776600 (gma) LOC100819313 (gma) ABF4 (sly) LOC101263766 (sly) LOC103637889 (zma) LOC103643147 (zma) LOC103837451 (bra) LOC103842661 (bra) LOC103848367 (bra) LOC103859804 (bra) LOC103869470 (bra) LOC103871400 (bra)

Subcellular
localization
wolf

nucl 9, cyto_nucl 5	(predict for NP_001154626.1)
nucl 8, cyto_nucl 4, chlo 1, pero 1	(predict for NP_001189934.1)
nucl 8, cyto_nucl 4, chlo 1, pero 1	(predict for NP_001326147.1)
nucl 6, cyto_nucl 4, chlo 1, pero 1	(predict for NP_001326148.1)
nucl 8, cyto_nucl 4, chlo 1, pero 1	(predict for NP_566629.1)

Subcellular
localization
TargetP

other 6	(predict for NP_001154626.1)
other 6	(predict for NP_001189934.1)
other 6	(predict for NP_001326147.1)
other 6	(predict for NP_001326148.1)
other 6	(predict for NP_566629.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	5
ath00360	Phenylalanine metabolism	2
ath00941	Flavonoid biosynthesis	2
ath00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

Genes directly connected with ABF4 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.0	AT1G69060	Chaperone DnaJ-domain superfamily protein	[detail]	843238
4.8	AT3G16940	calmodulin-binding transcription activator	[detail]	820950
4.6	ZAT	zinc transporter	[detail]	819293

Coexpressed
gene list

[Coexpressed gene list for ABF4]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

258026_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

258026_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

258026_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	821463
Refseq ID (protein)	NP_001154626.1
	NP_001189934.1
	NP_001326147.1
	NP_001326148.1
	NP_566629.1

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