ATTED-II : GeneID search result

[←][→] ath At3g19290 Gene

functional annotation

Function

ABRE binding factor 4

GO BP

GO:1903648 [list] [network] positive regulation of chlorophyll catabolic process	(2 genes)	IMP
GO:1900057 [list] [network] positive regulation of leaf senescence	(20 genes)	IMP
GO:0009738 [list] [network] abscisic acid-activated signaling pathway	(159 genes)	IMP
GO:0019760 [list] [network] glucosinolate metabolic process	(201 genes)	IMP
GO:0045893 [list] [network] positive regulation of DNA-templated transcription	(272 genes)	IDA IEA
GO:0009651 [list] [network] response to salt stress	(607 genes)	IEP
GO:0009414 [list] [network] response to water deprivation	(1006 genes)	IEP
GO:0009737 [list] [network] response to abscisic acid	(1086 genes)	IEP
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1656 genes)	TAS

GO CC

GO:0005634 [list] [network] nucleus

(10305 genes)

IDA ISM

GO MF

GO:0000976 [list] [network] transcription cis-regulatory region binding	(708 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1576 genes)	IEA ISS TAS
GO:0005515 [list] [network] protein binding	(5066 genes)	IPI

KEGG

ath04075 [list] [network] Plant hormone signal transduction (291 genes)

Protein

NP_001154626.1 NP_001189934.1 NP_001326147.1 NP_001326148.1 NP_566629.1

BLAST

NP_001154626.1 NP_001189934.1 NP_001326147.1 NP_001326148.1 NP_566629.1

Orthologous

[Ortholog page] AREB1 (sly) LOC606370 (tae) ABF3 (ath) ABF2 (ath) ABF1 (ath) LOC4330838 (osa) LOC4340462 (osa) LOC4345807 (osa) LOC4347257 (osa) LOC7462880 (ppo) LOC7490036 (ppo) LOC11435200 (mtr) LOC11446220 (mtr) LOC18097783 (ppo) LOC18104883 (ppo) BZIP71 (gma) LOC100146100 (tae) BZIP1 (gma) LOC100776600 (gma) LOC100819313 (gma) ABF4 (sly) LOC101263766 (sly) LOC103837451 (bra) LOC103842661 (bra) LOC103848367 (bra) LOC103859804 (bra) LOC103869470 (bra) LOC103871400 (bra) LOC123112190 (tae) LOC123128583 (tae) LOC123138454 (tae) LOC123145706 (tae) LOC123149675 (tae) LOC123157113 (tae) LOC123165557 (tae) LOC123398640 (hvu) LOC123401320 (hvu) LOC123411187 (hvu)

Subcellular
localization
wolf

nucl 9, cyto_nucl 5	(predict for NP_001154626.1)
nucl 8, cyto_nucl 4, chlo 1, pero 1	(predict for NP_001189934.1)
nucl 8, cyto_nucl 4, chlo 1, pero 1	(predict for NP_001326147.1)
nucl 6, cyto_nucl 4, chlo 1, pero 1	(predict for NP_001326148.1)
nucl 8, cyto_nucl 4, chlo 1, pero 1	(predict for NP_566629.1)

Subcellular
localization
TargetP

other 6	(predict for NP_001154626.1)
other 6	(predict for NP_001189934.1)
other 6	(predict for NP_001326147.1)
other 6	(predict for NP_001326148.1)
other 6	(predict for NP_566629.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath04075	Plant hormone signal transduction	2
ath03015	mRNA surveillance pathway	2

Genes directly connected with ABF4 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
5.0	AT5G23680	Sterile alpha motif (SAM) domain-containing protein	[detail]	832433
4.6	AT3G16940	calmodulin-binding transcription activator	[detail]	820950
4.5	SHL1	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein	[detail]	830065

Coexpressed
gene list

[Coexpressed gene list for ABF4]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

258026_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

258026_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

258026_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	821463
Refseq ID (protein)	NP_001154626.1
	NP_001189934.1
	NP_001326147.1
	NP_001326148.1
	NP_566629.1

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