ATTED-II : GeneID search result

[←][→] ath At4g21750 Gene

functional annotation

Function

Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

GO BP

GO:0009913 [list] [network] epidermal cell differentiation	(14 genes)	IGI
GO:2000033 [list] [network] regulation of seed dormancy process	(14 genes)	IEP
GO:0048825 [list] [network] cotyledon development	(59 genes)	IGI
GO:0010029 [list] [network] regulation of seed germination	(93 genes)	IEP
GO:0009845 [list] [network] seed germination	(99 genes)	IMP
GO:0090627 [list] [network] plant epidermal cell differentiation	(212 genes)	IMP
GO:0030154 [list] [network] cell differentiation	(1176 genes)	IMP
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1656 genes)	ISS

GO CC

GO:0005634 [list] [network] nucleus

(10305 genes)

IDA ISM

GO MF

GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(38 genes)	IEA
GO:0008289 [list] [network] lipid binding	(240 genes)	IEA
GO:0043565 [list] [network] sequence-specific DNA binding	(890 genes)	IDA
GO:0003677 [list] [network] DNA binding	(1277 genes)	ISS
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1576 genes)	ISS
GO:0005515 [list] [network] protein binding	(5066 genes)	IPI

KEGG

Protein

NP_001031692.1 NP_001329394.1 NP_001329395.1 NP_193906.2

BLAST

NP_001031692.1 NP_001329394.1 NP_001329395.1 NP_193906.2

Orthologous

[Ortholog page] PDF2 (ath) HDG2 (ath) LOC4337074 (osa) LOC4344614 (osa) LOC4344832 (osa) LOC7458546 (ppo) LOC7462050 (ppo) LOC7485428 (ppo) LOC7489907 (ppo) LOC11417538 (mtr) LOC11441377 (mtr) LOC100782240 (gma) LOC100782260 (gma) LOC100790101 (gma) LOC100797992 (gma) LOC100809556 (gma) LOC100815499 (gma) LOC101256132 (sly) LOC101259395 (sly) LOC101265620 (sly) LOC103834218 (bra) LOC103839805 (bra) LOC103843620 (bra) LOC103844157 (bra) LOC103859403 (bra) LOC103861249 (bra) LOC123046820 (tae) LOC123054665 (tae) LOC123147440 (tae) LOC123161615 (tae) LOC123164353 (tae) LOC123190512 (tae) LOC123407806 (hvu) LOC123427922 (hvu)

Subcellular
localization
wolf

nucl 9, chlo 1, vacu 1	(predict for NP_001031692.1)
nucl 9, chlo 1, vacu 1	(predict for NP_001329394.1)
nucl 9, chlo 1, vacu 1	(predict for NP_001329395.1)
nucl 9, chlo 1, vacu 1	(predict for NP_193906.2)

Subcellular
localization
TargetP

other 8	(predict for NP_001031692.1)
other 8	(predict for NP_001329394.1)
other 8	(predict for NP_001329395.1)
other 8	(predict for NP_193906.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00062	Fatty acid elongation	4
ath04626	Plant-pathogen interaction	4
ath02010	ABC transporters	4

Genes directly connected with ATML1 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
16.7	PDF2	protodermal factor 2	[detail]	825828
10.5	KCS10	3-ketoacyl-CoA synthase 10	[detail]	817165
10.2	ABCB2	P-glycoprotein 2	[detail]	828702
8.7	AT1G17200	Uncharacterized protein family (UPF0497)	[detail]	838291
7.6	HDG2	homeodomain GLABROUS 2	[detail]	839256
7.6	scpl25	serine carboxypeptidase-like 25	[detail]	821207
6.4	CR4	crinkly4	[detail]	825111
5.6	ANL2	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein	[detail]	828022

Coexpressed
gene list

[Coexpressed gene list for ATML1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

254370_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

254370_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

254370_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	828263
Refseq ID (protein)	NP_001031692.1
	NP_001329394.1
	NP_001329395.1
	NP_193906.2

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