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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   AT2G07739   Ycf1 protein 
 ath-u.5   AT2G07739   Ycf1 protein 
 ath-r.7   AT2G07739   Ycf1 protein 
 ath-u.5   ycf1   hypothetical protein 
 ath-u.5   ycf1   Ycf1 
 bna-r.1   orf257   hypothetical protein 
 bna-r.1   ycf1   hypothetical protein 
 bna-r.1   ycf1   hypothetical protein 
 cit-r.1   ycf1   hypothetical chloroplast RF1 
 cit-r.1   ycf1   hypothetical chloroplast RF1 
 cit-r.1   127899826   protein TIC 214 
 gma-u.5   ycf1   hypothetical chloroplast RF1 
 gma-u.5   ycf1   hypothetical chloroplast RF1 
 vvi-u.5   ycf1   hypothetical chloroplast RF1 
 ppo-u.5   Poptr_cp087   Ycf1 
 ppo-u.5   Poptr_cp076   hypothetical protein 
 mtr-u.5   120579889   protein TIC 214 
 mtr-u.5   120580686   uncharacterized mitochondrial protein AtMg00370 
 mtr-u.5   112416088   protein TIC 214 
 sly-u.5   112940893   putative protein TIC 214 N-terminal part 
 sly-u.5   101268834   protein TIC 214 
 sot-r.1   ycf1   hypothetical chloroplast RF1 
 nta-r.1   ycf1   Ycf1 
 nta-r.1   NitaCp079   hypothetical protein 

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Top 50 coexpressed genes to AT2G07739 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G07739 (ath-e.2 coexpression data)

CoexMap"815412"


athAT2G07739 | Entrez gene ID : 815412    
Species ath bna cit gma vvi ppo mtr sly sot nta sbi osa bra tae hvu ghi zma cre bdi
Paralog 5 3 3 2 1 2 3 2 1 2 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
Protein NP_178809.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 3,  E.R. 3,  E.R._plas 3,  golg 2  (predict for NP_178809.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_178809.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
AT2G07739
ath-u.5
for
AT2G07739
ath-r.7
for
AT2G07739
ath-u.5
for
ycf1
ath-u.5
for
ycf1
bna-r.1
for
orf257
bna-r.1
for
ycf1
bna-r.1
for
ycf1
cit-r.1
for
ycf1
cit-r.1
for
ycf1
cit-r.1
for
127899826
gma-u.5
for
ycf1
gma-u.5
for
ycf1
vvi-u.5
for
ycf1
ppo-u.5
for
Poptr_cp087
ppo-u.5
for
Poptr_cp076
mtr-u.5
for
120579889
mtr-u.5
for
120580686
mtr-u.5
for
112416088
sly-u.5
for
112940893
sly-u.5
for
101268834
sot-r.1
for
ycf1
nta-r.1
for
ycf1
nta-r.1
for
NitaCp079


Ortholog ID: 3899
Species ath ath ath bra bra bna bna bna ghi cit cit cit gma gma vvi ppo ppo mtr mtr mtr sly sly sly sot nta nta
Symbol AT2G07739 ycf1 ycf1 LOC117129784 LOC117129790 orf257 ycf1 ycf1 LOC121228061 ycf1 ycf1 LOC127900060 ycf1 ycf1 ycf1 Poptr_cp087 Poptr_cp076 LOC120579889 LOC120580686 LOC11435808 LOC112940893 LOC101268834 ycf1 ycf1 ycf1 NitaCp079
Function* Ycf1 protein hypothetical protein Ycf1 protein TIC 214 protein TIC 214 hypothetical protein hypothetical protein hypothetical protein protein TIC 214-like hypothetical chloroplast RF1 hypothetical chloroplast RF1 protein TIC 214-like hypothetical chloroplast RF1 hypothetical chloroplast RF1 hypothetical chloroplast RF1 Ycf1 hypothetical protein protein TIC 214 uncharacterized mitochondrial protein AtMg00370 protein TIC 214 putative protein TIC 214 N-terminal part protein TIC 214 hypothetical chloroplast RF1 hypothetical chloroplast RF1 Ycf1 hypothetical protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 8
ath00190 Oxidative phosphorylation 6
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 11
ath00970 Aminoacyl-tRNA biosynthesis 4
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 5
bra00190 Oxidative phosphorylation 4
bra03020 RNA polymerase 3
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 5
bra00190 Oxidative phosphorylation 4
bra03020 RNA polymerase 3
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
bna03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 11
gma00195 Photosynthesis 4
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 12
gma03010 Ribosome 5
gma00195 Photosynthesis 5
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
vvi00190 Oxidative phosphorylation 3
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo00190 Oxidative phosphorylation 6
ppo00195 Photosynthesis 2
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 7
ppo03010 Ribosome 6
ppo00195 Photosynthesis 5
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr00190 Oxidative phosphorylation 3
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 11
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 11
sly00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
sot00190 Oxidative phosphorylation 5
sot00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 6
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03010 Ribosome 4
nta00190 Oxidative phosphorylation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 815412 844706 4386139 117129784 117129790 4237937 11542056 11542013 121228061 4271147 4271109 127900060 3989353 3989366 4025074 4929748 4929736 120579889 120580686 11435808 112940893 101268834 3950474 4099913 7564685 1466307
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