ATTED-II : GeneCoexpression result

Species	Gene	Description
nta-r.1	ycf1	Ycf1
nta-r.1	NitaCp079	hypothetical protein
sly-u.5	101268834	protein TIC 214
sly-u.5	112940893	putative protein TIC 214 N-terminal part
sot-r.1	ycf1	hypothetical chloroplast RF1
ath-u.5	AT2G07739	Ycf1 protein
ath-u.5	ycf1	Ycf1
gma-u.5	ycf1	hypothetical chloroplast RF1
gma-u.5	ycf1	hypothetical chloroplast RF1
bra-r.6	117129784	protein TIC 214
bra-r.6	117129790	protein TIC 214
ppo-u.5	Poptr_cp087	Ycf1
ppo-u.5	Poptr_cp076	hypothetical protein
mtr-u.5	120580686	uncharacterized mitochondrial protein AtMg00370
mtr-u.5	120579889	protein TIC 214
mtr-u.5	112416088	protein TIC 214
ghi-r.1	121228061	protein TIC 214-like
ghi-r.1	ycf1	Ycf1
ghi-r.1	121226620	protein TIC 214-like
bna-r.1	ycf1	hypothetical protein
bna-r.1	orf257	hypothetical protein
bna-r.1	ycf1	hypothetical protein
cit-r.1	ycf1	hypothetical chloroplast RF1
cit-r.1	ycf1	hypothetical chloroplast RF1
cit-r.1	127899826	protein TIC 214

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

YP_002720024.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 7, nucl 1, vacu 1, E.R. 1, pero 1, E.R._vacu 1

(predict for YP_002720024.1)

Subcellular
localization
TargetP

scret 9

(predict for YP_002720024.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for ycf1	nta-r.1 for NitaCp079	sly-u.5 for 101268834	sly-u.5 for 112940893	sot-r.1 for ycf1	ath-u.5 for AT2G07739	ath-u.5 for ycf1	gma-u.5 for ycf1	gma-u.5 for ycf1	bra-r.6 for 117129784	bra-r.6 for 117129790	ppo-u.5 for Poptr_cp087	ppo-u.5 for Poptr_cp076	mtr-u.5 for 120580686	mtr-u.5 for 120579889	mtr-u.5 for 112416088	ghi-r.1 for 121228061	ghi-r.1 for ycf1	ghi-r.1 for 121226620	bna-r.1 for ycf1	bna-r.1 for orf257	bna-r.1 for ycf1	cit-r.1 for ycf1	cit-r.1 for ycf1	cit-r.1 for 127899826

Ortholog

Ortholog ID: 3899

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

Symbol

ycf1

ycf1

ycf1

ycf1

ycf1

orf257

ycf1

LOC127900060

Function^*

Ycf1

hypothetical protein

protein TIC 214

putative protein TIC 214 N-terminal part

hypothetical chloroplast RF1

Ycf1 protein

Ycf1

hypothetical protein

hypothetical chloroplast RF1

protein TIC 214

hypothetical chloroplast RF1

Ycf1

hypothetical protein

uncharacterized mitochondrial protein AtMg00370

protein TIC 214

protein TIC 214-like

hypothetical protein

hypothetical chloroplast RF1

protein TIC 214-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00195	Photosynthesis	6
nta00970	Aminoacyl-tRNA biosynthesis	4
nta03010	Ribosome	4
nta00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	11
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	11
sly00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	8
sot00190	Oxidative phosphorylation	5
sot00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	11
ath00970	Aminoacyl-tRNA biosynthesis	4
ath00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	8
ath00190	Oxidative phosphorylation	6
ath00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	11
gma00195	Photosynthesis	4
gma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	12
gma03010	Ribosome	5
gma00195	Photosynthesis	5
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	5
bra00190	Oxidative phosphorylation	4
bra03020	RNA polymerase	3
bra00630	Glyoxylate and dicarboxylate metabolism	2
bra00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	5
bra00190	Oxidative phosphorylation	4
bra03020	RNA polymerase	3
bra00630	Glyoxylate and dicarboxylate metabolism	2
bra00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	9
vvi00190	Oxidative phosphorylation	3
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	8
ppo00190	Oxidative phosphorylation	6
ppo00195	Photosynthesis	2
ppo03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	7
ppo03010	Ribosome	6
ppo00195	Photosynthesis	5
ppo03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr00190	Oxidative phosphorylation	3
mtr00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	7
ghi00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	4
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	3
bna03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	6
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	5
cit00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	5
cit00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	7
cit00190	Oxidative phosphorylation	2

Expression

Expression pattern

Entrez Gene ID^*

7564685

1466307

101268834

112940893

3950474

4099913

815412

4386139

844706

3989353

3989366

117129784

117129790

4025074

4929748

4929736

120580686

120579889

11435808

121228061

11542013

4237937

11542056

4271109

4271147

127900060

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to ycf1 (nta-r.1 coexpression data)

Top 50 enrichment test to ycf1 (nta-r.1 coexpression data)


Species	nta	sly	sot	ath	gma	bra	ppo	mtr	ghi	bna	cit	sbi	osa	tae	hvu	vvi	zma	cre	bdi
Paralog	2	2	1	2	2	2	2	3	3	3	3	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to ycf1 (nta-r.1 coexpression data)

Top 50 enrichment test to ycf1 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**