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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   RBR1   retinoblastoma-related 1 
 ath-u.5   RBR1   retinoblastoma-related 1 
 ath-r.7   RBR1   retinoblastoma-related 1 
 ath-m.9   RBR1   retinoblastoma-related 1 
 ath-m.4.bio   RBR1   retinoblastoma-related 1 
 ath-m.4.hor   RBR1   retinoblastoma-related 1 
 ath-m.4.lig   RBR1   retinoblastoma-related 1 
 ath-m.4.str   RBR1   retinoblastoma-related 1 
 ath-m.4.tis   RBR1   retinoblastoma-related 1 
 bra-r.6   103870260   retinoblastoma-related protein 1 
 bra-r.6   103249150   retinoblastoma-related protein 1 
 bra-r.6   103859438   retinoblastoma-related protein 1 
 bna-r.1   106400756   retinoblastoma-related protein 1 
 bna-r.1   106435408   retinoblastoma-related protein 1 
 bna-r.1   106452394   retinoblastoma-related protein 1 
 ghi-r.1   107897018   retinoblastoma-related protein 
 ghi-r.1   107927600   retinoblastoma-related protein 
 ghi-r.1   107927587   retinoblastoma-related protein 
 cit-r.1   102611926   retinoblastoma-related protein-like 
 cit-r.1   102611028   retinoblastoma-related protein 
 gma-u.5   100777429   retinoblastoma-related protein 1 
 gma-u.5   100777805   retinoblastoma-related protein 1 
 gma-u.5   100779266   retinoblastoma-related protein 1 
 vvi-u.5   RBR   retinoblastoma-related protein-like 
 vvi-u.5   100261814   retinoblastoma-related protein-like 
 ppo-u.5   7455806   retinoblastoma-related protein-like 
 mtr-u.5   11429529   retinoblastoma-related protein 
 sly-u.5   RBR1   retinoblastoma-related protein 1 
 sot-r.1   102593734   retinoblastoma-related protein 1 
 nta-r.1   107801954   retinoblastoma-related protein 1-like 
 nta-r.1   107777437   retinoblastoma-related protein 1 
 osa-u.5   4346176   retinoblastoma-related protein 1-like 
 osa-u.5   4350648   retinoblastoma-related protein 2-like 
 zma-u.5   100217179   uncharacterized LOC100217179 
 zma-u.5   732723   retinoblastoma-related 3 
 zma-u.5   541652   Retinoblastoma-related protein 2 
 tae-r.2   123097360   retinoblastoma-related protein 2 
 tae-r.2   100137000   retinoblastoma-related protein 1-like 
 tae-r.2   123092099   retinoblastoma-related protein 2 
 hvu-r.1   123407429   retinoblastoma-related protein 1 
 hvu-r.1   123448537   retinoblastoma-related protein 2-like 
 sbi-r.1   110435973   retinoblastoma-related protein 2-like 
 sbi-r.1   8060923   retinoblastoma-related protein 3 
 sbi-r.1   8068661   retinoblastoma-related protein 1 
 bdi-r.1   100844602   retinoblastoma-related protein 2 
 bdi-r.1   100826156   retinoblastoma-related protein 1 
 cre-r.1   CHLRE_06g255450v5   uncharacterized protein 

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Top 50 coexpressed genes to RBR1 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RBR1 (ath-e.2 coexpression data)

CoexMap"820408"


athRBR1 | Entrez gene ID : 820408      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 3 3 2 3 2 1 1 1 1 2 2 3 3 2 3 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010377 [list] [network] guard cell fate commitment  (2 genes)  IGI  
GO:0016480 [list] [network] negative regulation of transcription by RNA polymerase III  (2 genes)  IPI  
GO:1903866 [list] [network] palisade mesophyll development  (2 genes)  IMP  
GO:0000082 [list] [network] G1/S transition of mitotic cell cycle  (3 genes)  IMP TAS  
GO:0022619 [list] [network] generative cell differentiation  (3 genes)  IMP  
GO:2000036 [list] [network] regulation of stem cell population maintenance  (4 genes)  IMP  
GO:0051783 [list] [network] regulation of nuclear division  (20 genes)  IMP  
GO:0008356 [list] [network] asymmetric cell division  (22 genes)  IGI IMP  
GO:0007129 [list] [network] homologous chromosome pairing at meiosis  (31 genes)  IMP  
GO:0001708 [list] [network] cell fate specification  (33 genes)  IMP  
GO:0009960 [list] [network] endosperm development  (35 genes)  IMP  
GO:0032875 [list] [network] regulation of DNA endoreduplication  (36 genes)  IMP  
GO:0009567 [list] [network] double fertilization forming a zygote and endosperm  (45 genes)  IEP  
GO:0010090 [list] [network] trichome morphogenesis  (66 genes)  IMP  
GO:0001558 [list] [network] regulation of cell growth  (119 genes)  IMP  
GO:0051726 [list] [network] regulation of cell cycle  (135 genes)  IMP  
GO:0009553 [list] [network] embryo sac development  (161 genes)  IMP  
GO:0048366 [list] [network] leaf development  (371 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO:0048229 [list] [network] gametophyte development  (505 genes)  IMP  
GO:0030154 [list] [network] cell differentiation  (627 genes)  IMP  
GO CC
GO:0070176 [list] [network] DRM complex  (15 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0008134 [list] [network] transcription factor binding  (41 genes)  TAS  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001189868.1 [sequence] [blastp]
NP_566417.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  nucl_plas 2,  E.R. 1,  cyto_plas 1  (predict for NP_001189868.1)
nucl 4,  cyto 2,  nucl_plas 2,  E.R. 1,  cyto_plas 1  (predict for NP_566417.3)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_001189868.1)
other 8,  chlo 3  (predict for NP_566417.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
RBR1
ath-u.5
for
RBR1
ath-r.7
for
RBR1
ath-m.9
for
RBR1
ath-m.4.bio
for
RBR1
ath-m.4.hor
for
RBR1
ath-m.4.lig
for
RBR1
ath-m.4.str
for
RBR1
ath-m.4.tis
for
RBR1
bra-r.6
for
103870260
bra-r.6
for
103249150
bra-r.6
for
103859438
bna-r.1
for
106400756
bna-r.1
for
106435408
bna-r.1
for
106452394
ghi-r.1
for
107897018
ghi-r.1
for
107927600
ghi-r.1
for
107927587
cit-r.1
for
102611926
cit-r.1
for
102611028
gma-u.5
for
100777429
gma-u.5
for
100777805
gma-u.5
for
100779266
vvi-u.5
for
RBR
vvi-u.5
for
100261814
ppo-u.5
for
7455806
mtr-u.5
for
11429529
sly-u.5
for
RBR1
sot-r.1
for
102593734
nta-r.1
for
107801954
nta-r.1
for
107777437
osa-u.5
for
4346176
osa-u.5
for
4350648
zma-u.5
for
100217179
zma-u.5
for
732723
zma-u.5
for
541652
tae-r.2
for
123097360
tae-r.2
for
100137000
tae-r.2
for
123092099
hvu-r.1
for
123407429
hvu-r.1
for
123448537
sbi-r.1
for
110435973
sbi-r.1
for
8060923
sbi-r.1
for
8068661
bdi-r.1
for
100844602
bdi-r.1
for
100826156
cre-r.1
for
CHLRE_06g255450v5


Ortholog ID: 3574
Species ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo mtr sly sot nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi cre
Symbol RBR1 LOC103870260 LOC103249150 LOC103859438 LOC106435408 LOC106418451 LOC106351903 LOC107927600 LOC107927587 LOC107904794 LOC102611926 LOC102611028 LOC100777429 LOC100777805 LOC100779266 RBR LOC100261814 LOC7455806 LOC11429529 RBR1 LOC102593734 LOC107801954 LOC107777437 LOC4346176 LOC4350648 LOC100217179 LOC732723 LOC541651 LOC123097360 LOC100137000 LOC123085899 LOC123407429 LOC123448537 LOC110435973 LOC8068661 LOC8056978 LOC100844602 LOC100826156 CHLRE_06g255450v5
Function* retinoblastoma-related 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1-like retinoblastoma-related protein 1 retinoblastoma-related protein retinoblastoma-related protein retinoblastoma-related protein retinoblastoma-related protein-like retinoblastoma-related protein retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein-like retinoblastoma-related protein-like retinoblastoma-related protein-like retinoblastoma-related protein retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1-like retinoblastoma-related protein 1 retinoblastoma-related protein 1-like retinoblastoma-related protein 2-like uncharacterized LOC100217179 retinoblastoma-related 3 ZmRB retinoblastoma-related protein 2 retinoblastoma-related protein 1-like retinoblastoma-related protein 2 retinoblastoma-related protein 1 retinoblastoma-related protein 2-like retinoblastoma-related protein 2-like retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein 2 retinoblastoma-related protein 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 7
ath03430 Mismatch repair 3
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 5
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03460 Fanconi anemia pathway 2
bra03013 Nucleocytoplasmic transport 2
bra03410 Base excision repair 2
bra03030 DNA replication 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03430 Mismatch repair 5
bra03410 Base excision repair 4
bra03030 DNA replication 3
bra03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
bna03430 Mismatch repair 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
bna03430 Mismatch repair 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 12
osa03440 Homologous recombination 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 12
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00220 Arginine biosynthesis 2
tae00250 Alanine, aspartate and glutamate metabolism 2
tae00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00330 Arginine and proline metabolism 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae03040 Spliceosome 3
tae00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 9
bdi03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820408 103870260 103249150 103859438 106435408 106418451 106351903 107927600 107927587 107904794 102611926 102611028 100777429 100777805 100779266 100261011 100261814 7455806 11429529 101055575 102593734 107801954 107777437 4346176 4350648 100217179 732723 541651 123097360 100137000 123085899 123407429 123448537 110435973 8068661 8056978 100844602 100826156 5722130
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