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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106452394   retinoblastoma-related protein 1 
 ath-u.5   RBR1   retinoblastoma-related 1 
 gma-u.5   100777429   retinoblastoma-related protein 1 
 gma-u.5   100777805   retinoblastoma-related protein 1 
 gma-u.5   100779266   retinoblastoma-related protein 1 
 vvi-u.5   RBR   retinoblastoma-related protein-like 
 vvi-u.5   100261814   retinoblastoma-related protein-like 
 ppo-u.5   7455806   retinoblastoma-related protein-like 
 mtr-u.5   11429529   retinoblastoma-related protein 
 sly-u.5   RBR1   retinoblastoma-related protein 1 
 osa-u.5   4346176   retinoblastoma-related protein 1-like 
 osa-u.5   4350648   retinoblastoma-related protein 2-like 
 zma-u.5   541651   ZmRB 
 zma-u.5   100217179   uncharacterized LOC100217179 
 zma-u.5   732723   retinoblastoma-related 3 

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Top 50 coexpressed genes to 106452394 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106452394 (bna-r.1 coexpression data)

CoexMap"106452394"


bnaLOC106452394 | Entrez gene ID : 106452394    
Species bna ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta
Paralog 1 1 3 2 1 1 1 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:2000134 [list] [network] negative regulation of G1/S transition of mitotic cell cycle  (6 genes)  IEA  
GO:0030154 [list] [network] cell differentiation  (242 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1371 genes)  IEA  
GO CC
GO:0005667 [list] [network] transcription regulator complex  (441 genes)  IEA  
GO:0000785 [list] [network] chromatin  (564 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (875 genes)  IEA  
Protein XP_013749950.2 [sequence] [blastp]
XP_013749952.1 [sequence] [blastp]
XP_022568382.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  nucl_plas 2,  vacu 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_013749950.2)
nucl 4,  cyto 1,  plas 1,  cyto_plas 1,  chlo 1,  mito 1,  vacu 1,  E.R. 1,  chlo_mito 1,  golg_plas 1,  E.R._vacu 1,  cyto_pero 1,  cysk_plas 1  (predict for XP_013749952.1)
nucl 4,  cyto 2,  nucl_plas 2,  vacu 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_022568382.2)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for XP_013749950.2)
other 8,  chlo 3  (predict for XP_013749952.1)
other 8,  chlo 3  (predict for XP_022568382.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106452394

.
ath-u.5
for
RBR1

.
gma-u.5
for
100777429

.
gma-u.5
for
100777805

.
gma-u.5
for
100779266

.
vvi-u.5
for
RBR

.
vvi-u.5
for
100261814

.
ppo-u.5
for
7455806

.
mtr-u.5
for
11429529

.
sly-u.5
for
RBR1

.
osa-u.5
for
4346176

.
osa-u.5
for
4350648

.
zma-u.5
for
541651

.
zma-u.5
for
100217179

.
zma-u.5
for
732723

.


Ortholog ID: 3574
Species ath gma gma sly osa osa zma zma bra bra vvi vvi ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit cit bdi bdi nta nta
Symbol RBR1 LOC100779266 LOC100777805 RBR1 LOC4346176 LOC4350648 LOC732723 LOC100217179 LOC103870260 LOC103859438 RBR LOC100261814 LOC7455806 LOC11429529 LOC123097360 LOC100137000 LOC123407429 LOC123448537 LOC107904794 LOC107927587 LOC106418451 LOC106351903 CHLRE_06g255450v5 LOC8068661 LOC110435973 LOC102593734 LOC102611028 LOC102611926 LOC100826156 LOC100844602 LOC107801954 LOC107777437
Function* retinoblastoma-related 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein 1-like retinoblastoma-related protein 2-like retinoblastoma-related 3 uncharacterized LOC100217179 retinoblastoma-related protein 1 retinoblastoma-related protein 1 retinoblastoma-related protein-like retinoblastoma-related protein-like retinoblastoma-related protein-like retinoblastoma-related protein retinoblastoma-related protein 2 retinoblastoma-related protein 1-like retinoblastoma-related protein 1 retinoblastoma-related protein 2-like retinoblastoma-related protein retinoblastoma-related protein retinoblastoma-related protein 1-like retinoblastoma-related protein 1 uncharacterized protein retinoblastoma-related protein 1 retinoblastoma-related protein 2-like retinoblastoma-related protein 1 retinoblastoma-related protein retinoblastoma-related protein-like retinoblastoma-related protein 1 retinoblastoma-related protein 2 retinoblastoma-related protein 1-like retinoblastoma-related protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 7
ath03430 Mismatch repair 3
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 12
osa03440 Homologous recombination 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 12
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 5
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03430 Mismatch repair 5
bra03410 Base excision repair 4
bra03030 DNA replication 3
bra03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00220 Arginine biosynthesis 2
tae00250 Alanine, aspartate and glutamate metabolism 2
tae00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00330 Arginine and proline metabolism 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae03040 Spliceosome 3
tae00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
bna03430 Mismatch repair 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 9
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820408 100779266 100777805 101055575 4346176 4350648 732723 100217179 103870260 103859438 100261011 100261814 7455806 11429529 123097360 100137000 123407429 123448537 107904794 107927587 106418451 106351903 5722130 8068661 110435973 102593734 102611028 102611926 100826156 100844602 107801954 107777437
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