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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   SGF29a   SGF29 tudor-like domain-containing protein 
 ath-u.5   SGF29a   SGF29 tudor-like domain-containing protein 
 ath-r.7   SGF29a   SGF29 tudor-like domain-containing protein 
 ath-u.5   SGF29b   SGF29 tudor-like domain-containing protein 
 bra-r.6   103875218   SAGA-associated factor 29 homolog A 
 bra-r.6   103854231   SAGA-associated factor 29 homolog A-like 
 bna-r.1   111198743   SAGA-associated factor 29 homolog A 
 bna-r.1   125580447   SAGA-associated factor 29 homolog A-like 
 bna-r.1   BNAA06G32090D   SAGA-associated factor 29 homolog A 
 ghi-r.1   107911769   SAGA-associated factor 29 homolog A 
 ghi-r.1   107922987   SAGA-associated factor 29 homolog A 
 ghi-r.1   107926049   SAGA-associated factor 29 homolog A 
 cit-r.1   102610957   SAGA-associated factor 29 homolog A 
 gma-u.5   100807100   SAGA-associated factor 29 homolog B 
 gma-u.5   100526864   SAGA-associated factor 29 homolog A 
 vvi-u.5   100250716   SAGA-associated factor 29 homolog A 
 ppo-u.5   7487883   SAGA-associated factor 29 homolog A 
 mtr-u.5   25497895   SAGA-associated factor 29 homolog B 
 mtr-u.5   25497898   SAGA-associated factor 29 homolog B 
 sly-u.5   101259099   SAGA-associated factor 29 homolog A 
 sot-r.1   102584443   SAGA-associated factor 29 homolog 
 nta-r.1   107768043   SAGA-associated factor 29 homolog A 
 nta-r.1   107797557   SAGA-associated factor 29 homolog A 
 nta-r.1   107801823   SAGA-associated factor 29 homolog A-like 
 osa-u.5   4352010   SAGA-associated factor 29 homolog A 
 zma-u.5   100273149   uncharacterized LOC100273149 
 tae-r.2   123102900   SAGA-associated factor 29 homolog A 
 tae-r.2   123110955   SAGA-associated factor 29 homolog A 
 tae-r.2   123119958   SAGA-associated factor 29 homolog A 
 hvu-r.1   123395421   SAGA-associated factor 29 homolog A-like 
 sbi-r.1   8086164   SAGA-associated factor 29 
 bdi-r.1   100836901   SAGA-associated factor 29 homolog A 

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Top 50 coexpressed genes to SGF29a (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SGF29a (ath-e.2 coexpression data)

CoexMap"822367"


athSGF29a | Entrez gene ID : 822367      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 3 3 1 2 1 1 2 1 1 3 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009651 [list] [network] response to salt stress  (473 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
Protein NP_001154650.1 [sequence] [blastp]
NP_001326213.1 [sequence] [blastp]
NP_001326214.1 [sequence] [blastp]
NP_001326215.1 [sequence] [blastp]
NP_189382.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 2,  cysk 1  (predict for NP_001154650.1)
nucl 6,  cyto_nucl 4,  cysk 1,  cyto 1,  cysk_plas 1  (predict for NP_001326213.1)
nucl 6,  cyto 2,  cysk 1  (predict for NP_001326214.1)
nucl 6,  cyto_nucl 4,  cysk 1,  cyto 1  (predict for NP_001326215.1)
nucl 6,  cyto 2,  cysk 1  (predict for NP_189382.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001154650.1)
other 9  (predict for NP_001326213.1)
other 9  (predict for NP_001326214.1)
other 9  (predict for NP_001326215.1)
other 9  (predict for NP_189382.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
SGF29a
ath-u.5
for
SGF29a
ath-r.7
for
SGF29a
ath-u.5
for
SGF29b
bra-r.6
for
103875218
bra-r.6
for
103854231
bna-r.1
for
111198743
bna-r.1
for
125580447
bna-r.1
for
BNAA06G32090D
ghi-r.1
for
107911769
ghi-r.1
for
107922987
ghi-r.1
for
107926049
cit-r.1
for
102610957
gma-u.5
for
100807100
gma-u.5
for
100526864
vvi-u.5
for
100250716
ppo-u.5
for
7487883
mtr-u.5
for
25497895
mtr-u.5
for
25497898
sly-u.5
for
101259099
sot-r.1
for
102584443
nta-r.1
for
107768043
nta-r.1
for
107797557
nta-r.1
for
107801823
osa-u.5
for
4352010
zma-u.5
for
100273149
tae-r.2
for
123102900
tae-r.2
for
123110955
tae-r.2
for
123119958
hvu-r.1
for
123395421
sbi-r.1
for
8086164
bdi-r.1
for
100836901


Ortholog ID: 6007
Species ath ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo mtr mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol SGF29a SGF29b LOC103875218 LOC103854231 LOC111198743 LOC125580447 LOC106424678 LOC107922987 LOC107926049 LOC107897901 LOC102610957 LOC100807100 LOC100526864 LOC100250716 LOC7487883 LOC25497895 LOC25497898 LOC101259099 LOC102584443 LOC107768043 LOC107797557 LOC107801823 LOC4352010 LOC100273149 LOC123102900 LOC123110955 LOC123119958 LOC123395421 LOC8086164 LOC100836901
Function* SGF29 tudor-like domain-containing protein SGF29 tudor-like domain-containing protein SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog A-like SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog A-like SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog B SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog B SAGA-associated factor 29 homolog B SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog A-like SAGA-associated factor 29 homolog A uncharacterized LOC100273149 SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog A SAGA-associated factor 29 homolog A-like SAGA-associated factor 29 SAGA-associated factor 29 homolog A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
bra03008 Ribosome biogenesis in eukaryotes 3
bra03250 Viral life cycle - HIV-1 3
bra00010 Glycolysis / Gluconeogenesis 2
bra00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 6
bna04070 Phosphatidylinositol signaling system 6
bna04075 Plant hormone signal transduction 6
bna04626 Plant-pathogen interaction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 4
ghi03272 Virion - Hepatitis viruses 4
ghi04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta00230 Purine metabolism 2
nta00730 Thiamine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta00230 Purine metabolism 2
nta00730 Thiamine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta00230 Purine metabolism 2
nta00730 Thiamine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00053 Ascorbate and aldarate metabolism 3
tae00562 Inositol phosphate metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04070 Phosphatidylinositol signaling system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822367 834053 103875218 103854231 111198743 125580447 106424678 107922987 107926049 107897901 102610957 100807100 100526864 100250716 7487883 25497895 25497898 101259099 102584443 107768043 107797557 107801823 4352010 100273149 123102900 123110955 123119958 123395421 8086164 100836901
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