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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   AT4G39160   Homeodomain-like superfamily protein 
 ath-u.5   AT4G39160   Homeodomain-like superfamily protein 
 ath-r.7   AT4G39160   Homeodomain-like superfamily protein 
 ath-m.9   AT4G39160   Homeodomain-like superfamily protein 
 ath-m.4.bio   AT4G39160   Homeodomain-like superfamily protein 
 ath-m.4.hor   AT4G39160   Homeodomain-like superfamily protein 
 ath-m.4.lig   AT4G39160   Homeodomain-like superfamily protein 
 ath-m.4.str   AT4G39160   Homeodomain-like superfamily protein 
 ath-m.4.tis   AT4G39160   Homeodomain-like superfamily protein 
 bra-r.6   103835139   glutamic acid-rich protein 
 bra-r.6   103828061   uncharacterized LOC103828061 
 bna-r.1   106402511   glutamic acid-rich protein-like 
 bna-r.1   106366038   uncharacterized LOC106366038 
 bna-r.1   106361492   glutamic acid-rich protein-like 
 ghi-r.1   107891629   transcription factor TFIIIB component B'' homolog 
 ghi-r.1   107889049   transcription factor TFIIIB component B'' homolog 
 cit-r.1   102613204   transcription factor TFIIIB component B'' 
 gma-u.5   100809837   uncharacterized LOC100809837 
 gma-u.5   100800405   uncharacterized LOC100800405 
 vvi-u.5   100854024   uncharacterized LOC100854024 
 ppo-u.5   7475967   uncharacterized LOC7475967 
 mtr-u.5   25492665   transcription factor TFIIIB component B'' 
 mtr-u.5   11437440   transcription factor TFIIIB component B'' 
 sly-u.5   101258718   transcription factor TFIIIB component B'' 
 sot-r.1   102601114   transcription factor TFIIIB component B'' 
 nta-r.1   107797408   uncharacterized LOC107797408 
 nta-r.1   107815047   uncharacterized LOC107815047 
 nta-r.1   107811026   uncharacterized LOC107811026 
 osa-u.5   9267825   uncharacterized LOC9267825 
 zma-u.5   103628985   uncharacterized LOC103628985 
 zma-u.5   103627513   G patch domain-containing protein 4 
 zma-u.5   100304161   transcription factor TFIIIB component B'' homolog 
 tae-r.2   123182488   uncharacterized LOC123182488 
 tae-r.2   123061116   uncharacterized LOC123061116 
 tae-r.2   123128563   transcription factor TFIIIB component B'' homolog 
 hvu-r.1   123443679   uncharacterized LOC123443679 
 hvu-r.1   123404070   transcription factor TFIIIB component B''-like 
 sbi-r.1   8069083   uncharacterized LOC8069083 
 sbi-r.1   8074021   transcription factor TFIIIB component B'' 
 bdi-r.1   104581510   uncharacterized LOC104581510 
 cre-r.1   CHLRE_15g640800v5   uncharacterized protein 

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Top 50 coexpressed genes to AT4G39160 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G39160 (ath-e.2 coexpression data)

CoexMap"830071"


athAT4G39160 | Entrez gene ID : 830071      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 2 1 1 3 1 3 3 2 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001190961.1 [sequence] [blastp]
NP_001320166.1 [sequence] [blastp]
NP_195627.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001190961.1)
nucl 10  (predict for NP_001320166.1)
nucl 10  (predict for NP_195627.2)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for NP_001190961.1)
other 7,  chlo 4  (predict for NP_001320166.1)
other 7,  chlo 4  (predict for NP_195627.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
AT4G39160
ath-u.5
for
AT4G39160
ath-r.7
for
AT4G39160
ath-m.9
for
AT4G39160
ath-m.4.bio
for
AT4G39160
ath-m.4.hor
for
AT4G39160
ath-m.4.lig
for
AT4G39160
ath-m.4.str
for
AT4G39160
ath-m.4.tis
for
AT4G39160
bra-r.6
for
103835139
bra-r.6
for
103828061
bna-r.1
for
106402511
bna-r.1
for
106366038
bna-r.1
for
106361492
ghi-r.1
for
107891629
ghi-r.1
for
107889049
cit-r.1
for
102613204
gma-u.5
for
100809837
gma-u.5
for
100800405
vvi-u.5
for
100854024
ppo-u.5
for
7475967
mtr-u.5
for
25492665
mtr-u.5
for
11437440
sly-u.5
for
101258718
sot-r.1
for
102601114
nta-r.1
for
107797408
nta-r.1
for
107815047
nta-r.1
for
107811026
osa-u.5
for
9267825
zma-u.5
for
103628985
zma-u.5
for
103627513
zma-u.5
for
100304161
tae-r.2
for
123182488
tae-r.2
for
123061116
tae-r.2
for
123128563
hvu-r.1
for
123443679
hvu-r.1
for
123404070
sbi-r.1
for
8069083
sbi-r.1
for
8074021
bdi-r.1
for
104581510
cre-r.1
for
CHLRE_15g640800v5


Ortholog ID: 5160
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr mtr sly sot nta nta nta osa zma zma zma tae tae tae hvu hvu sbi sbi bdi cre
Symbol AT4G39160 LOC103835139 LOC103828061 LOC106366038 LOC106361492 LOC125575824 LOC107891629 LOC107889049 LOC102613204 LOC100809837 LOC100800405 LOC100854024 LOC7475967 LOC25492665 LOC11437440 LOC101258718 LOC102601114 LOC107797408 LOC107815047 LOC107811026 LOC9267825 LOC103628985 LOC103627513 LOC100304161 LOC123182488 LOC123061116 LOC123138430 LOC123443679 LOC123404070 LOC8069083 LOC8074021 LOC104581510 CHLRE_15g640800v5
Function* Homeodomain-like superfamily protein glutamic acid-rich protein uncharacterized LOC103828061 uncharacterized LOC106366038 glutamic acid-rich protein-like uncharacterized LOC125575824 transcription factor TFIIIB component B'' homolog transcription factor TFIIIB component B'' homolog transcription factor TFIIIB component B'' uncharacterized LOC100809837 uncharacterized LOC100800405 uncharacterized LOC100854024 uncharacterized LOC7475967 transcription factor TFIIIB component B'' transcription factor TFIIIB component B'' transcription factor TFIIIB component B'' transcription factor TFIIIB component B'' uncharacterized LOC107797408 uncharacterized LOC107815047 uncharacterized LOC107811026 uncharacterized LOC9267825 uncharacterized LOC103628985 G patch domain-containing protein 4 transcription factor TFIIIB component B'' homolog uncharacterized LOC123182488 uncharacterized LOC123061116 transcription factor TFIIIB component B'' uncharacterized LOC123443679 transcription factor TFIIIB component B''-like uncharacterized LOC8069083 transcription factor TFIIIB component B'' uncharacterized LOC104581510 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
bra00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 3
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 4
ghi03440 Homologous recombination 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03015 mRNA surveillance pathway 3
tae03040 Spliceosome 3
tae03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 7
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830071 103835139 103828061 106366038 106361492 125575824 107891629 107889049 102613204 100809837 100800405 100854024 7475967 25492665 11437440 101258718 102601114 107797408 107815047 107811026 9267825 103628985 103627513 100304161 123182488 123061116 123138430 123443679 123404070 8069083 8074021 104581510 5726152
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