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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   RSR4   Aldolase-type TIM barrel family protein 
 ath-u.5   RSR4   Aldolase-type TIM barrel family protein 
 ath-r.7   RSR4   Aldolase-type TIM barrel family protein 
 ath-m.9   RSR4   Aldolase-type TIM barrel family protein 
 ath-m.4.bio   RSR4   Aldolase-type TIM barrel family protein 
 ath-m.4.hor   RSR4   Aldolase-type TIM barrel family protein 
 ath-m.4.lig   RSR4   Aldolase-type TIM barrel family protein 
 ath-m.4.str   RSR4   Aldolase-type TIM barrel family protein 
 ath-m.4.tis   RSR4   Aldolase-type TIM barrel family protein 
 ath-u.5   PDX1L4   putative PDX1-like protein 4 
 ath-u.5   PDX1.1   pyridoxine biosynthesis 1.1 
 ath-u.5   PDX1.2   pyridoxine biosynthesis 1.2 
 gma-u.5   732627   pyridoxine biosynthesis protein 
 gma-u.5   100816306   pyridoxal 5'-phosphate synthase subunit PDX1 
 vvi-u.5   100242970   pyridoxal 5'-phosphate synthase-like subunit PDX1.2 
 vvi-u.5   100260451   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 ppo-u.5   7470551   pyridoxal 5'-phosphate synthase-like subunit PDX1.2 
 ppo-u.5   7487474   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 ppo-u.5   7468053   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 mtr-u.5   11446851   pyridoxal 5'-phosphate synthase subunit PDX1.3 
 sly-u.5   101257782   probable pyridoxal 5'-phosphate synthase subunit PDX1 
 sly-u.5   101251664   pyridoxal 5'-phosphate synthase-like subunit PDX1.2 
 osa-u.5   4347937   probable pyridoxal 5'-phosphate synthase subunit PDX1.2 
 osa-u.5   4342162   probable pyridoxal 5'-phosphate synthase subunit PDX1.1 
 zma-u.5   100272732   uncharacterized LOC100272732 

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Top 50 coexpressed genes to RSR4 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RSR4 (ath-e.2 coexpression data)

CoexMap"831738"


athRSR4 | Entrez gene ID : 831738      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 12 2 2 3 1 2 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00750 [list] [network] Vitamin B6 metabolism (15 genes)
ath01240 [list] [network] Biosynthesis of cofactors (237 genes)
GO BP
GO:0006982 [list] [network] response to lipid hydroperoxide  (1 genes)  IMP  
GO:0010335 [list] [network] response to non-ionic osmotic stress  (1 genes)  IMP  
GO:0008615 [list] [network] pyridoxine biosynthetic process  (2 genes)  IGI  
GO:0042819 [list] [network] vitamin B6 biosynthetic process  (6 genes)  IGI  
GO:0015994 [list] [network] chlorophyll metabolic process  (47 genes)  IMP  
GO:0042538 [list] [network] hyperosmotic salinity response  (57 genes)  IMP  
GO:0010224 [list] [network] response to UV-B  (85 genes)  IGI  
GO:0006520 [list] [network] amino acid metabolic process  (242 genes)  IMP  
GO:0006979 [list] [network] response to oxidative stress  (384 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IMP  
GO CC
GO:0012505 [list] [network] endomembrane system  (2163 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA IDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0046982 [list] [network] protein heterodimerization activity  (86 genes)  IPI  
GO:0042803 [list] [network] protein homodimerization activity  (237 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001331465.1 [sequence] [blastp]
NP_195761.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9  (predict for NP_001331465.1)
cyto 9  (predict for NP_195761.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001331465.1)
other 8  (predict for NP_195761.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
RSR4
ath-u.5
for
RSR4
ath-r.7
for
RSR4
ath-m.9
for
RSR4
ath-m.4.bio
for
RSR4
ath-m.4.hor
for
RSR4
ath-m.4.lig
for
RSR4
ath-m.4.str
for
RSR4
ath-m.4.tis
for
RSR4
ath-u.5
for
PDX1L4
ath-u.5
for
PDX1.1
ath-u.5
for
PDX1.2
gma-u.5
for
732627
gma-u.5
for
100816306
vvi-u.5
for
100242970
vvi-u.5
for
100260451
ppo-u.5
for
7470551
ppo-u.5
for
7487474
ppo-u.5
for
7468053
mtr-u.5
for
11446851
sly-u.5
for
101257782
sly-u.5
for
101251664
osa-u.5
for
4347937
osa-u.5
for
4342162
zma-u.5
for
100272732


Ortholog ID: 2709
Species ath ath bra bna bna ghi ghi cit cit gma gma vvi vvi ppo ppo mtr sly sly sot sot nta nta osa osa zma tae tae hvu hvu sbi bdi bdi cre
Symbol PDX1.2 PDX1L4 LOC103855422 LOC106433826 LOC106405963 LOC107932685 LOC107890961 LOC102623292 LOC102610004 LOC100816306 LOC732627 LOC100242970 LOC100260451 LOC7468053 LOC7470551 LOC11446851 LOC101257782 LOC101251664 LOC102590002 LOC102588309 LOC107805188 LOC107807313 LOC4347937 LOC4342162 LOC100272732 LOC123091732 LOC123045174 LOC123426398 LOC123448224 LOC8081595 LOC100837310 LOC100842713 CHLRE_15g643550v5
Function* pyridoxine biosynthesis 1.2 putative PDX1-like protein 4 pyridoxal 5'-phosphate synthase subunit PDX1.3 pyridoxal 5'-phosphate synthase subunit PDX1.3 pyridoxal 5'-phosphate synthase subunit PDX1.1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 probable pyridoxal 5'-phosphate synthase subunit PDX1 probable pyridoxal 5'-phosphate synthase subunit PDX1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 pyridoxal 5'-phosphate synthase subunit PDX1 pyridoxine biosynthesis protein pyridoxal 5'-phosphate synthase-like subunit PDX1.2 probable pyridoxal 5'-phosphate synthase subunit PDX1 probable pyridoxal 5'-phosphate synthase subunit PDX1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 pyridoxal 5'-phosphate synthase subunit PDX1.3 probable pyridoxal 5'-phosphate synthase subunit PDX1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 probable pyridoxal 5'-phosphate synthase subunit PDX1 pyridoxal 5'-phosphate synthase-like subunit PDX1.2 putative pyridoxal 5'-phosphate synthase subunit PDX1 putative pyridoxal 5'-phosphate synthase subunit PDX1 probable pyridoxal 5'-phosphate synthase subunit PDX1.2 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 uncharacterized LOC100272732 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 probable pyridoxal 5'-phosphate synthase subunit PDX1.1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 4
ath00630 Glyoxylate and dicarboxylate metabolism 3
ath04146 Peroxisome 2
ath00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 4
bra00860 Porphyrin metabolism 2
bra00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 4
bna04075 Plant hormone signal transduction 4
bna00750 Vitamin B6 metabolism 3
bna01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00750 Vitamin B6 metabolism 3
ghi01240 Biosynthesis of cofactors 3
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 8
ghi00750 Vitamin B6 metabolism 6
ghi00230 Purine metabolism 3
ghi00250 Alanine, aspartate and glutamate metabolism 3
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00600 Sphingolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 2
gma00543 Exopolysaccharide biosynthesis 2
gma00920 Sulfur metabolism 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma00750 Vitamin B6 metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 8
vvi03040 Spliceosome 3
vvi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 5
ppo00630 Glyoxylate and dicarboxylate metabolism 4
ppo00250 Alanine, aspartate and glutamate metabolism 3
ppo00260 Glycine, serine and threonine metabolism 3
ppo01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 11
ppo04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 5
mtr00053 Ascorbate and aldarate metabolism 3
mtr01200 Carbon metabolism 3
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 5
sly03040 Spliceosome 2
sly04144 Endocytosis 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00920 Sulfur metabolism 5
sot01320 Sulfur cycle 4
sot01200 Carbon metabolism 4
sot00940 Phenylpropanoid biosynthesis 3
sot01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot04141 Protein processing in endoplasmic reticulum 3
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 6
nta00260 Glycine, serine and threonine metabolism 4
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 6
nta00260 Glycine, serine and threonine metabolism 4
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 3
osa00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 4
osa01230 Biosynthesis of amino acids 3
osa00750 Vitamin B6 metabolism 2
osa00230 Purine metabolism 2
osa01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00750 Vitamin B6 metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae00750 Vitamin B6 metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 8
tae01200 Carbon metabolism 7
tae00710 Carbon fixation by Calvin cycle 6
tae00750 Vitamin B6 metabolism 6
tae01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 4
sbi00260 Glycine, serine and threonine metabolism 3
sbi01200 Carbon metabolism 3
sbi01230 Biosynthesis of amino acids 3
sbi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00750 Vitamin B6 metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00750 Vitamin B6 metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 8
cre01240 Biosynthesis of cofactors 5
cre00290 Valine, leucine and isoleucine biosynthesis 3
cre01210 2-Oxocarboxylic acid metabolism 3
cre00770 Pantothenate and CoA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820850 818400 103855422 106433826 106405963 107932685 107890961 102623292 102610004 100816306 732627 100242970 100260451 7468053 7470551 11446851 101257782 101251664 102590002 102588309 107805188 107807313 4347937 4342162 100272732 123091732 123045174 123426398 123448224 8081595 100837310 100842713 66056484
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