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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-e.2   AT1G29060   Target SNARE coiled-coil domain protein 
 ath-u.5   AT1G29060   Target SNARE coiled-coil domain protein 
 ath-r.7   AT1G29060   Target SNARE coiled-coil domain protein 
 ath-m.9   AT1G29060   Target SNARE coiled-coil domain protein 
 ath-m.4.bio   AT1G29060   Target SNARE coiled-coil domain protein 
 ath-m.4.hor   AT1G29060   Target SNARE coiled-coil domain protein 
 ath-m.4.lig   AT1G29060   Target SNARE coiled-coil domain protein 
 ath-m.4.str   AT1G29060   Target SNARE coiled-coil domain protein 
 ath-m.4.tis   AT1G29060   Target SNARE coiled-coil domain protein 
 ath-u.5   AT4G14600   Target SNARE coiled-coil domain protein 
 bra-r.6   103828987   bet1-like protein At4g14600 
 bra-r.6   103835301   bet1-like protein At4g14600 
 bna-r.1   106356191   bet1-like protein At4g14600 
 bna-r.1   111204686   bet1-like protein At4g14600 
 bna-r.1   106435519   bet1-like protein At4g14600 
 ghi-r.1   107931254   bet1-like protein At4g14600 
 ghi-r.1   107913377   bet1-like protein At4g14600 
 ghi-r.1   121230329   bet1-like protein At4g14600 
 cit-r.1   102609375   bet1-like protein At4g14600 
 gma-u.5   100306642   uncharacterized LOC100306642 
 gma-u.5   100500358   uncharacterized LOC100500358 
 gma-u.5   100787783   bet1-like protein At4g14600 
 vvi-u.5   100263950   bet1-like protein At4g14600 
 vvi-u.5   100260787   bet1-like protein At4g14600 
 ppo-u.5   7486564   bet1-like protein At4g14600 
 mtr-u.5   11437121   bet1-like protein At4g14600 
 mtr-u.5   25489904   bet1-like protein At4g14600 
 sly-u.5   101245755   bet1-like protein At4g14600 
 sly-u.5   101259211   bet1-like protein At4g14600 
 sot-r.1   102591156   bet1-like protein At4g14600 
 sot-r.1   102579420   bet1-like protein At4g14600 
 nta-r.1   107793187   bet1-like protein At4g14600 
 nta-r.1   107772535   bet1-like protein At4g14600 
 nta-r.1   107764886   bet1-like protein At4g14600 
 osa-u.5   4343711   bet1-like protein At4g14600 
 osa-u.5   4331882   bet1-like protein At4g14600 
 zma-u.5   100382407   uncharacterized LOC100382407 
 zma-u.5   100276126   uncharacterized LOC100276126 
 tae-r.2   123052303   bet1-like protein At4g14600 
 tae-r.2   123044440   bet1-like protein At4g14600 
 tae-r.2   123188106   bet1-like protein At4g14600 
 hvu-r.1   123425575   bet1-like protein At4g14600 
 sbi-r.1   8058352   bet1-like protein At4g14600 
 sbi-r.1   8081997   bet1-like protein At1g29060 
 bdi-r.1   100843636   bet1-like protein At4g14600 
 cre-r.1   CHLRE_09g405600v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G29060 (ath-e.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G29060 (ath-e.2 coexpression data)

CoexMap"839780"


athAT1G29060 | Entrez gene ID : 839780      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 3 1 3 2 1 2 2 2 3 2 2 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04130 [list] [network] SNARE interactions in vesicular transport (55 genes)
GO BP
GO:0043182 [list] [network] vacuolar sequestering of sodium ion  (2 genes)  IMP  
GO:1901002 [list] [network] positive regulation of response to salt stress  (13 genes)  IMP  
GO:0047484 [list] [network] regulation of response to osmotic stress  (53 genes)  IMP  
GO CC
GO:0000137 [list] [network] Golgi cis cisterna  (41 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  IDA ISM  
GO MF
Protein NP_001321073.1 [sequence] [blastp]
NP_564319.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto_nucl 4,  cyto 4,  nucl 2,  cysk_nucl 2,  cyto_pero 2,  cyto_E.R. 2  (predict for NP_001321073.1)
golg 4,  mito 1,  chlo 1,  nucl 1,  cyto 1,  plas 1,  vacu 1,  E.R. 1,  cyto_nucl 1,  cyto_mito 1,  nucl_plas 1,  E.R._vacu 1,  E.R._plas 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_564319.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001321073.1)
mito 4,  other 4  (predict for NP_564319.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-e.2
for
AT1G29060
ath-u.5
for
AT1G29060
ath-r.7
for
AT1G29060
ath-m.9
for
AT1G29060
ath-m.4.bio
for
AT1G29060
ath-m.4.hor
for
AT1G29060
ath-m.4.lig
for
AT1G29060
ath-m.4.str
for
AT1G29060
ath-m.4.tis
for
AT1G29060
ath-u.5
for
AT4G14600
bra-r.6
for
103828987
bra-r.6
for
103835301
bna-r.1
for
106356191
bna-r.1
for
111204686
bna-r.1
for
106435519
ghi-r.1
for
107931254
ghi-r.1
for
107913377
ghi-r.1
for
121230329
cit-r.1
for
102609375
gma-u.5
for
100306642
gma-u.5
for
100500358
gma-u.5
for
100787783
vvi-u.5
for
100263950
vvi-u.5
for
100260787
ppo-u.5
for
7486564
mtr-u.5
for
11437121
mtr-u.5
for
25489904
sly-u.5
for
101245755
sly-u.5
for
101259211
sot-r.1
for
102591156
sot-r.1
for
102579420
nta-r.1
for
107793187
nta-r.1
for
107772535
nta-r.1
for
107764886
osa-u.5
for
4343711
osa-u.5
for
4331882
zma-u.5
for
100382407
zma-u.5
for
100276126
tae-r.2
for
123052303
tae-r.2
for
123044440
tae-r.2
for
123188106
hvu-r.1
for
123425575
sbi-r.1
for
8058352
sbi-r.1
for
8081997
bdi-r.1
for
100843636
cre-r.1
for
CHLRE_09g405600v5


Ortholog ID: 4262
Species ath ath bra bra bna bna ghi ghi ghi cit gma gma gma vvi vvi ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma tae tae tae hvu sbi sbi bdi cre
Symbol AT1G29060 AT4G14600 LOC103828987 LOC103835301 LOC111204686 LOC106361664 LOC107931254 LOC107913377 LOC121218218 LOC102609375 LOC100306642 LOC100500358 LOC100787783 LOC100263950 LOC100260787 LOC7486564 LOC11437121 LOC25489904 LOC101245755 LOC101259211 LOC102591156 LOC102579420 LOC107793187 LOC107772535 LOC107787894 LOC4343711 LOC4331882 LOC100382407 LOC100276126 LOC123052303 LOC123044440 LOC123188106 LOC123425575 LOC8058352 LOC8081997 LOC100843636 CHLRE_09g405600v5
Function* Target SNARE coiled-coil domain protein Target SNARE coiled-coil domain protein bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 uncharacterized LOC100306642 uncharacterized LOC100500358 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 uncharacterized LOC100382407 uncharacterized LOC100276126 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At4g14600 bet1-like protein At1g29060 bet1-like protein At4g14600 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 4
ath04145 Phagosome 2
ath04120 Ubiquitin mediated proteolysis 2
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03060 Protein export 3
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04130 SNARE interactions in vesicular transport 8
ghi03010 Ribosome 3
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 3
cit00190 Oxidative phosphorylation 2
cit04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
gma04130 SNARE interactions in vesicular transport 2
gma04145 Phagosome 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 6
gma03040 Spliceosome 3
gma04144 Endocytosis 3
gma04130 SNARE interactions in vesicular transport 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00410 beta-Alanine metabolism 2
gma00640 Propanoate metabolism 2
gma04146 Peroxisome 2
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04136 Autophagy - other 2
vvi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 4
mtr04145 Phagosome 2
mtr04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 11
sly04130 SNARE interactions in vesicular transport 2
sly03060 Protein export 2
sly04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 4
sot04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03083 Polycomb repressive complex 3
sot04120 Ubiquitin mediated proteolysis 3
sot04141 Protein processing in endoplasmic reticulum 3
sot04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04130 SNARE interactions in vesicular transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04130 SNARE interactions in vesicular transport 4
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04130 SNARE interactions in vesicular transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 2
zma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma04130 SNARE interactions in vesicular transport 3
zma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 5
tae04144 Endocytosis 3
tae04145 Phagosome 3
tae04148 Efferocytosis 3
tae04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 5
tae04144 Endocytosis 3
tae04145 Phagosome 3
tae04148 Efferocytosis 3
tae04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04130 SNARE interactions in vesicular transport 3
tae00600 Sphingolipid metabolism 3
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 4
hvu03060 Protein export 3
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04136 Autophagy - other 3
bdi03050 Proteasome 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04120 Ubiquitin mediated proteolysis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839780 827108 103828987 103835301 111204686 106361664 107931254 107913377 121218218 102609375 100306642 100500358 100787783 100263950 100260787 7486564 11437121 25489904 101245755 101259211 102591156 102579420 107793187 107772535 107787894 4343711 4331882 100382407 100276126 123052303 123044440 123188106 123425575 8058352 8081997 100843636 5723210
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