ATTED-II : GeneCoexpression result

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Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT2G07715	Nucleic acid-binding, OB-fold-like protein
ath-r.7	AT2G07715	Nucleic acid-binding, OB-fold-like protein
ath-e.2	AT2G07715	Nucleic acid-binding, OB-fold-like protein
ath-u.5	rpl2	ribosomal protein L2
bra-r.6	103833201	60S ribosomal protein L2, mitochondrial
bna-r.1	111205203	60S ribosomal protein L2, mitochondrial
bna-r.1	rpl2	ribosomal protein L2
ghi-r.1	rpl2	ribosomal protein L2
cit-r.1	102625342	60S ribosomal protein L2, mitochondrial
gma-u.5	100813518	60S ribosomal protein L2, mitochondrial
gma-u.5	100527336	putative 60S ribosomal protein L2
vvi-u.5	rpl2	ribosomal protein L2
mtr-u.5	25497414	60S ribosomal protein L2, mitochondrial
sly-u.5	rpl2	ribosomal protein L2
sly-u.5	rpl2	ribosomal protein L2
nta-r.1	rpl2	ribosomal protein L2
nta-r.1	orf315	hypothetical protein

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Top 50 coexpressed genes to AT2G07715 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

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Top 50 enrichment test to AT2G07715 (ath-u.5 coexpression data)

CoexMap"815389"

LCNloc

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006412 [list] [network] translation

(926 genes)

IEA

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

GO:0003729 [list] [network] mRNA binding

(1514 genes)

IDA

Protein

NP_178797.2 [sequence] [blastp]

Subcellular
localization
wolf

mito 6, chlo 4

(predict for NP_178797.2)

Subcellular
localization
TargetP

mito 8, chlo 4

(predict for NP_178797.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT2G07715	ath-r.7 for AT2G07715	ath-e.2 for AT2G07715	ath-u.5 for rpl2	bra-r.6 for 103833201	bna-r.1 for 111205203	bna-r.1 for rpl2	ghi-r.1 for rpl2	cit-r.1 for 102625342	gma-u.5 for 100813518	gma-u.5 for 100527336	vvi-u.5 for rpl2	mtr-u.5 for 25497414	sly-u.5 for rpl2	sly-u.5 for rpl2	nta-r.1 for rpl2	nta-r.1 for orf315

Ortholog

Ortholog ID: 12410

Species

ath

ath

bra

bna

bna

ghi

cit

gma

gma

vvi

mtr

sly

sly

nta

nta

Symbol

Function^*

Nucleic acid-binding, OB-fold-like protein

ribosomal protein L2

60S ribosomal protein L2, mitochondrial

60S ribosomal protein L2, mitochondrial

ribosomal protein L2

ribosomal protein L2

60S ribosomal protein L2, mitochondrial

60S ribosomal protein L2, mitochondrial

putative 60S ribosomal protein L2

ribosomal protein L2

60S ribosomal protein L2, mitochondrial

ribosomal protein L2

ribosomal protein L2

ribosomal protein L2

hypothetical protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2
bra03010	Ribosome	2
bra00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	4
ghi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2
cit03013	Nucleocytoplasmic transport	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	13
gma00520	Amino sugar and nucleotide sugar metabolism	2
gma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	11
vvi03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	4
mtr03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6
sly00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	5
sly00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	7
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	9
nta03010	Ribosome	2
nta00020	Citrate cycle (TCA cycle)	2
nta01200	Carbon metabolism	2

Expression

Expression pattern

Expression pattern

Expression pattern

Expression pattern

Expression pattern

Expression pattern

Expression pattern

Expression pattern

Expression pattern

Expression pattern

Expression pattern

Expression pattern

Expression pattern

Expression pattern

Expression pattern

Entrez Gene ID^*

815389

36335661

103833201

111205203

4237945

24679516

102625342

100813518

100527336

7498640

25497414

34678304

34678321

3205363

3205210

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