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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT2G28605   Photosystem II reaction center PsbP family protein 
 ath-r.7   AT2G28605   Photosystem II reaction center PsbP family protein 
 ath-m.9   AT2G28605   Photosystem II reaction center PsbP family protein 
 ath-e.2   AT2G28605   Photosystem II reaction center PsbP family protein 
 ath-m.4.bio   AT2G28605   Photosystem II reaction center PsbP family protein 
 ath-m.4.hor   AT2G28605   Photosystem II reaction center PsbP family protein 
 ath-m.4.lig   AT2G28605   Photosystem II reaction center PsbP family protein 
 ath-m.4.str   AT2G28605   Photosystem II reaction center PsbP family protein 
 ath-m.4.tis   AT2G28605   Photosystem II reaction center PsbP family protein 
 bra-r.6   103864902   psbP domain-containing protein 2, chloroplastic 
 bra-r.6   103858285   psbP domain-containing protein 2, chloroplastic 
 bna-r.1   111213938   psbP domain-containing protein 2, chloroplastic 
 bna-r.1   106446888   psbP domain-containing protein 2, chloroplastic 
 bna-r.1   106443682   psbP domain-containing protein 2, chloroplastic 
 ghi-r.1   107897330   psbP domain-containing protein 2, chloroplastic 
 ghi-r.1   107914439   psbP domain-containing protein 2, chloroplastic 
 cit-r.1   102609035   psbP domain-containing protein 2, chloroplastic 
 gma-u.5   100819837   psbP domain-containing protein 2, chloroplastic 
 gma-u.5   100776047   psbP domain-containing protein 2, chloroplastic 
 vvi-u.5   100245853   psbP domain-containing protein 2, chloroplastic 
 ppo-u.5   7490178   psbP domain-containing protein 2, chloroplastic 
 mtr-u.5   11424008   psbP domain-containing protein 2, chloroplastic 
 sly-u.5   101259233   psbP domain-containing protein 2, chloroplastic 
 sot-r.1   102599743   psbP domain-containing protein 2, chloroplastic 
 nta-r.1   107776818   psbP domain-containing protein 2, chloroplastic-like 
 nta-r.1   107800868   psbP domain-containing protein 2, chloroplastic 
 osa-u.5   4335897   psbP domain-containing protein 2, chloroplastic 
 zma-u.5   100272548   PsbP domain-containing protein 2 chloroplastic 
 tae-r.2   123189252   psbP domain-containing protein 2, chloroplastic 
 tae-r.2   123053350   psbP domain-containing protein 2, chloroplastic 
 tae-r.2   123041414   psbP domain-containing protein 2, chloroplastic 
 hvu-r.1   123430298   psbP domain-containing protein 2, chloroplastic 
 bdi-r.1   100837219   psbP domain-containing protein 2, chloroplastic 
 cre-r.1   CHLRE_16g678851v5   uncharacterized protein 

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Top 50 coexpressed genes to AT2G28605 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G28605 (ath-u.5 coexpression data)

CoexMap"817409"


athAT2G28605 | Entrez gene ID : 817409      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu bdi cre sbi
Paralog 9 2 3 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0015979 [list] [network] photosynthesis  (154 genes)  IEA  
GO CC
GO:0009654 [list] [network] photosystem II oxygen evolving complex  (17 genes)  IEA  
GO:0019898 [list] [network] extrinsic component of membrane  (30 genes)  IEA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0005509 [list] [network] calcium ion binding  (158 genes)  IEA  
Protein NP_850123.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  chlo_mito 4,  nucl 1  (predict for NP_850123.1)
Subcellular
localization
TargetP
chlo 5  (predict for NP_850123.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT2G28605
ath-r.7
for
AT2G28605
ath-m.9
for
AT2G28605
ath-e.2
for
AT2G28605
ath-m.4.bio
for
AT2G28605
ath-m.4.hor
for
AT2G28605
ath-m.4.lig
for
AT2G28605
ath-m.4.str
for
AT2G28605
ath-m.4.tis
for
AT2G28605
bra-r.6
for
103864902
bra-r.6
for
103858285
bna-r.1
for
111213938
bna-r.1
for
106446888
bna-r.1
for
106443682
ghi-r.1
for
107897330
ghi-r.1
for
107914439
cit-r.1
for
102609035
gma-u.5
for
100819837
gma-u.5
for
100776047
vvi-u.5
for
100245853
ppo-u.5
for
7490178
mtr-u.5
for
11424008
sly-u.5
for
101259233
sot-r.1
for
102599743
nta-r.1
for
107776818
nta-r.1
for
107800868
osa-u.5
for
4335897
zma-u.5
for
100272548
tae-r.2
for
123189252
tae-r.2
for
123053350
tae-r.2
for
123041414
hvu-r.1
for
123430298
bdi-r.1
for
100837219
cre-r.1
for
CHLRE_16g678851v5


Ortholog ID: 8402
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu bdi cre
Symbol AT2G28605 LOC103864902 LOC103858285 LOC111213938 LOC106446888 LOC106437383 LOC107897330 LOC107914439 LOC102609035 LOC100819837 LOC100776047 LOC100245853 LOC7490178 LOC11424008 LOC101259233 LOC102599743 LOC107776818 LOC107800868 LOC4335897 LOC100272548 LOC123189252 LOC123053350 LOC123041414 LOC123430298 LOC100837219 CHLRE_16g678851v5
Function* Photosystem II reaction center PsbP family protein psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic-like psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic PsbP domain-containing protein 2 chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic psbP domain-containing protein 2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 2
ghi00380 Tryptophan metabolism 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 5
ghi00380 Tryptophan metabolism 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00860 Porphyrin metabolism 2
sly00630 Glyoxylate and dicarboxylate metabolism 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00750 Vitamin B6 metabolism 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 3
osa00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817409 103864902 103858285 111213938 106446888 106437383 107897330 107914439 102609035 100819837 100776047 100245853 7490178 11424008 101259233 102599743 107776818 107800868 4335897 100272548 123189252 123053350 123041414 123430298 100837219 5721527
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