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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT2G42780   transcription elongation factor B polypeptide 
 ath-r.7   AT2G42780   transcription elongation factor B polypeptide 
 ath-m.9   AT2G42780   transcription elongation factor B polypeptide 
 ath-e.2   AT2G42780   transcription elongation factor B polypeptide 
 ath-m.4.bio   AT2G42780   transcription elongation factor B polypeptide 
 ath-m.4.hor   AT2G42780   transcription elongation factor B polypeptide 
 ath-m.4.lig   AT2G42780   transcription elongation factor B polypeptide 
 ath-m.4.str   AT2G42780   transcription elongation factor B polypeptide 
 ath-m.4.tis   AT2G42780   transcription elongation factor B polypeptide 
 bra-r.6   103858028   uncharacterized LOC103858028 
 bna-r.1   106388289   transcription elongation factor B polypeptide 3-like 
 bna-r.1   106428097   uncharacterized LOC106428097 
 ghi-r.1   107931305   transcription elongation factor B polypeptide 3 
 ghi-r.1   107888510   transcription elongation factor B polypeptide 3 
 cit-r.1   102629354   uncharacterized LOC102629354 
 gma-u.5   100527281   elongin subunit A domain-containing protein 
 vvi-u.5   100252279   uncharacterized LOC100252279 
 ppo-u.5   7470750   uncharacterized LOC7470750 
 mtr-u.5   11434377   transcription elongation factor B polypeptide 3 
 mtr-u.5   11431234   transcription elongation factor B polypeptide 3 
 sly-u.5   101258385   uncharacterized LOC101258385 
 sot-r.1   102593806   uncharacterized LOC102593806 
 nta-r.1   107822617   uncharacterized LOC107822617 
 nta-r.1   107762669   uncharacterized LOC107762669 
 osa-u.5   4344764   uncharacterized LOC4344764 
 zma-u.5   100276576   uncharacterized LOC100276576 
 tae-r.2   123187718   transcription elongation factor B polypeptide 3 
 tae-r.2   123180052   uncharacterized LOC123180052 
 tae-r.2   123105781   uncharacterized LOC123105781 
 hvu-r.1   123411371   uncharacterized LOC123411371 
 hvu-r.1   123452825   uncharacterized LOC123452825 
 sbi-r.1   8080879   uncharacterized LOC8080879 
 bdi-r.1   100825116   uncharacterized LOC100825116 
 cre-r.1   CHLRE_06g280200v5   uncharacterized protein 

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Top 50 coexpressed genes to AT2G42780 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G42780 (ath-u.5 coexpression data)

CoexMap"818878"


athAT2G42780 | Entrez gene ID : 818878      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 2 1 1 2 1 1 3 2 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (8 genes)  IEA  
GO CC
GO:0070449 [list] [network] elongin complex  (1 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001189736.1 [sequence] [blastp]
NP_565984.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  cyto_nucl 4,  nucl 2,  chlo 2  (predict for NP_001189736.1)
nucl 4,  cyto_nucl 4,  nucl_plas 2,  cyto 2,  chlo 2  (predict for NP_565984.1)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for NP_001189736.1)
other 6,  mito 3  (predict for NP_565984.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT2G42780
ath-r.7
for
AT2G42780
ath-m.9
for
AT2G42780
ath-e.2
for
AT2G42780
ath-m.4.bio
for
AT2G42780
ath-m.4.hor
for
AT2G42780
ath-m.4.lig
for
AT2G42780
ath-m.4.str
for
AT2G42780
ath-m.4.tis
for
AT2G42780
bra-r.6
for
103858028
bna-r.1
for
106388289
bna-r.1
for
106428097
ghi-r.1
for
107931305
ghi-r.1
for
107888510
cit-r.1
for
102629354
gma-u.5
for
100527281
vvi-u.5
for
100252279
ppo-u.5
for
7470750
mtr-u.5
for
11434377
mtr-u.5
for
11431234
sly-u.5
for
101258385
sot-r.1
for
102593806
nta-r.1
for
107822617
nta-r.1
for
107762669
osa-u.5
for
4344764
zma-u.5
for
100276576
tae-r.2
for
123187718
tae-r.2
for
123180052
tae-r.2
for
123105781
hvu-r.1
for
123411371
hvu-r.1
for
123452825
sbi-r.1
for
8080879
bdi-r.1
for
100825116
cre-r.1
for
CHLRE_06g280200v5


Ortholog ID: 7968
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu hvu sbi bdi cre
Symbol AT2G42780 LOC103858028 LOC106388289 LOC106428097 LOC107931305 LOC107888510 LOC102629354 LOC100527281 LOC100252279 LOC7470750 LOC11434377 LOC11431234 LOC101258385 LOC102593806 LOC107822617 LOC107762669 LOC4344764 LOC100276576 LOC123187718 LOC123180052 LOC123105781 LOC123411371 LOC123452825 LOC8080879 LOC100825116 CHLRE_06g280200v5
Function* transcription elongation factor B polypeptide uncharacterized LOC103858028 transcription elongation factor B polypeptide 3-like uncharacterized LOC106428097 transcription elongation factor B polypeptide 3 transcription elongation factor B polypeptide 3 uncharacterized LOC102629354 elongin subunit A domain-containing protein uncharacterized LOC100252279 uncharacterized LOC7470750 transcription elongation factor B polypeptide 3 transcription elongation factor B polypeptide 3 uncharacterized LOC101258385 uncharacterized LOC102593806 uncharacterized LOC107822617 uncharacterized LOC107762669 uncharacterized LOC4344764 uncharacterized LOC100276576 transcription elongation factor B polypeptide 3 uncharacterized LOC123180052 uncharacterized LOC123105781 uncharacterized LOC123411371 uncharacterized LOC123452825 uncharacterized LOC8080879 uncharacterized LOC100825116 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 3
ath04120 Ubiquitin mediated proteolysis 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03060 Protein export 2
cit04145 Phagosome 2
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00280 Valine, leucine and isoleucine degradation 2
vvi00860 Porphyrin metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04130 SNARE interactions in vesicular transport 8
nta04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04130 SNARE interactions in vesicular transport 6
nta04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 3
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 3
tae03272 Virion - Hepatitis viruses 3
tae04144 Endocytosis 3
tae03008 Ribosome biogenesis in eukaryotes 2
tae04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 2
tae03272 Virion - Hepatitis viruses 2
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu00564 Glycerophospholipid metabolism 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00270 Cysteine and methionine metabolism 3
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818878 103858028 106388289 106428097 107931305 107888510 102629354 100527281 100252279 7470750 11434377 11431234 101258385 102593806 107822617 107762669 4344764 100276576 123187718 123180052 123105781 123411371 123452825 8080879 100825116 66053753
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