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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g280200v5   uncharacterized protein 
 ath-u.5   AT2G42780   transcription elongation factor B polypeptide 
 gma-u.5   100527281   elongin subunit A domain-containing protein 
 sly-u.5   101258385   uncharacterized LOC101258385 
 osa-u.5   4344764   uncharacterized LOC4344764 
 zma-u.5   100276576   uncharacterized LOC100276576 
 vvi-u.5   100252279   uncharacterized LOC100252279 
 ppo-u.5   7470750   uncharacterized LOC7470750 
 mtr-u.5   11434377   transcription elongation factor B polypeptide 3 
 mtr-u.5   11431234   transcription elongation factor B polypeptide 3 

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Top 50 coexpressed genes to CHLRE_06g280200v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g280200v5 (cre-r.1 coexpression data)

CoexMap"66053753"


creCHLRE_06g280200v5 | Entrez gene ID : 66053753    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (15 genes)  IEA  
GO CC
GO:0070449 [list] [network] elongin complex  (2 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
Protein XP_042923950.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_042923950.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042923950.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g280200v5

.
ath-u.5
for
AT2G42780

.
gma-u.5
for
100527281

.
sly-u.5
for
101258385

.
osa-u.5
for
4344764

.
zma-u.5
for
100276576

.
vvi-u.5
for
100252279

.
ppo-u.5
for
7470750

.
mtr-u.5
for
11434377

.
mtr-u.5
for
11431234

.


Ortholog ID: 7968
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT2G42780 LOC100527281 LOC101258385 LOC4344764 LOC100276576 LOC103858028 LOC100252279 LOC7470750 LOC11431234 LOC123187718 LOC123180052 LOC123452825 LOC107888510 LOC107931305 LOC106388289 LOC106428097 CHLRE_06g280200v5 LOC8080879 LOC102593806 LOC102629354 LOC100825116 LOC107822617 LOC107762669
Function* transcription elongation factor B polypeptide elongin subunit A domain-containing protein uncharacterized LOC101258385 uncharacterized LOC4344764 uncharacterized LOC100276576 uncharacterized LOC103858028 uncharacterized LOC100252279 uncharacterized LOC7470750 transcription elongation factor B polypeptide 3 transcription elongation factor B polypeptide 3 uncharacterized LOC123180052 uncharacterized LOC123452825 transcription elongation factor B polypeptide 3 transcription elongation factor B polypeptide 3 transcription elongation factor B polypeptide 3-like uncharacterized LOC106428097 uncharacterized protein uncharacterized LOC8080879 uncharacterized LOC102593806 uncharacterized LOC102629354 uncharacterized LOC100825116 uncharacterized LOC107822617 uncharacterized LOC107762669
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 3
ath04120 Ubiquitin mediated proteolysis 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 3
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00280 Valine, leucine and isoleucine degradation 2
vvi00860 Porphyrin metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 3
tae03272 Virion - Hepatitis viruses 3
tae04144 Endocytosis 3
tae03008 Ribosome biogenesis in eukaryotes 2
tae04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 2
tae03272 Virion - Hepatitis viruses 2
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu00564 Glycerophospholipid metabolism 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00270 Cysteine and methionine metabolism 3
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03060 Protein export 2
cit04145 Phagosome 2
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04130 SNARE interactions in vesicular transport 8
nta04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04130 SNARE interactions in vesicular transport 6
nta04145 Phagosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818878 100527281 101258385 4344764 100276576 103858028 100252279 7470750 11431234 123187718 123180052 123452825 107888510 107931305 106388289 106428097 66053753 8080879 102593806 102629354 100825116 107822617 107762669
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