ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT3G10810	zinc finger (C3HC4-type RING finger) family protein
ath-r.7	AT3G10810	zinc finger (C3HC4-type RING finger) family protein
ath-m.9	AT3G10810	zinc finger (C3HC4-type RING finger) family protein
ath-e.2	AT3G10810	zinc finger (C3HC4-type RING finger) family protein
ath-m.4.bio	AT3G10810	zinc finger (C3HC4-type RING finger) family protein
ath-m.4.hor	AT3G10810	zinc finger (C3HC4-type RING finger) family protein
ath-m.4.lig	AT3G10810	zinc finger (C3HC4-type RING finger) family protein
ath-m.4.str	AT3G10810	zinc finger (C3HC4-type RING finger) family protein
ath-m.4.tis	AT3G10810	zinc finger (C3HC4-type RING finger) family protein
ath-u.5	AT3G56590	hydroxyproline-rich glycoprotein family protein
bra-r.6	103847296	protein transport protein SEC31
bra-r.6	103841561	uncharacterized LOC103841561
bra-r.6	103863097	uncharacterized LOC103863097
bna-r.1	125608082	uncharacterized LOC125608082
bna-r.1	106445226	uncharacterized LOC106445226
bna-r.1	106434584	protein transport protein SEC31
ghi-r.1	107925895	uncharacterized LOC107925895
ghi-r.1	121223511	uncharacterized LOC121223511
gma-u.5	100818532	uncharacterized LOC100818532
gma-u.5	100792490	uncharacterized LOC100792490
gma-u.5	100819068	uncharacterized LOC100819068
vvi-u.5	100248215	uncharacterized LOC100248215
ppo-u.5	7464054	uncharacterized LOC7464054
ppo-u.5	7479638	uncharacterized LOC7479638
mtr-u.5	11413293	uncharacterized LOC11413293
sly-u.5	101260385	vacuolar protein-sorting protein bro1-like
sly-u.5	101250645	uncharacterized LOC101250645
sot-r.1	102604829	uncharacterized LOC102604829
sot-r.1	102584778	uncharacterized LOC102584778
nta-r.1	107823363	uncharacterized LOC107823363
nta-r.1	107808132	uncharacterized LOC107808132
nta-r.1	107802853	uncharacterized LOC107802853
osa-u.5	4338601	uncharacterized LOC4338601
osa-u.5	4326504	uncharacterized LOC4326504
zma-u.5	100501523	zinc finger (C3HC4-type RING finger) family protein
zma-u.5	103636306	uncharacterized LOC103636306
tae-r.2	123130197	uncharacterized LOC123130197
tae-r.2	123072350	uncharacterized LOC123072350
tae-r.2	123063373	uncharacterized LOC123063373
hvu-r.1	123440276	uncharacterized LOC123440276
hvu-r.1	123445416	uncharacterized LOC123445416
sbi-r.1	8062293	uncharacterized LOC8062293
sbi-r.1	8055825	uncharacterized LOC8055825
sbi-r.1	110431891	uncharacterized LOC110431891
bdi-r.1	100823449	uncharacterized LOC100823449
bdi-r.1	100845784	uncharacterized LOC100845784
bdi-r.1	100826938	uncharacterized LOC100826938

Top 50 coexpressed genes to AT3G10810 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G10810 (ath-u.5 coexpression data)

CoexMap"820250"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005886 [list] [network] plasma membrane

(2598 genes)

ISM

GO MF

Protein

NP_001325900.1 [sequence] [blastp]
NP_187692.2 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, E.R. 4, nucl 1, cyto 1, mito 1, cyto_nucl 1	(predict for NP_001325900.1)
plas 4, E.R. 3, nucl_plas 3	(predict for NP_187692.2)

Subcellular
localization
TargetP

other 9	(predict for NP_001325900.1)
other 9	(predict for NP_187692.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G10810	ath-r.7 for AT3G10810	ath-m.9 for AT3G10810	ath-e.2 for AT3G10810	ath-m.4.bio for AT3G10810	ath-m.4.hor for AT3G10810	ath-m.4.lig for AT3G10810	ath-m.4.str for AT3G10810	ath-m.4.tis for AT3G10810	ath-u.5 for AT3G56590	bra-r.6 for 103847296	bra-r.6 for 103841561	bra-r.6 for 103863097	bna-r.1 for 125608082	bna-r.1 for 106445226	bna-r.1 for 106434584	ghi-r.1 for 107925895	ghi-r.1 for 121223511	gma-u.5 for 100818532	gma-u.5 for 100792490	gma-u.5 for 100819068	vvi-u.5 for 100248215	ppo-u.5 for 7464054	ppo-u.5 for 7479638	mtr-u.5 for 11413293	sly-u.5 for 101260385	sly-u.5 for 101250645	sot-r.1 for 102604829	sot-r.1 for 102584778	nta-r.1 for 107823363	nta-r.1 for 107808132	nta-r.1 for 107802853	osa-u.5 for 4338601	osa-u.5 for 4326504	zma-u.5 for 100501523	zma-u.5 for 103636306	tae-r.2 for 123130197	tae-r.2 for 123072350	tae-r.2 for 123063373	hvu-r.1 for 123440276	hvu-r.1 for 123445416	sbi-r.1 for 8062293	sbi-r.1 for 8055825	sbi-r.1 for 110431891	bdi-r.1 for 100823449	bdi-r.1 for 100845784	bdi-r.1 for 100826938

Ortholog

Ortholog ID: 3797

Species

ath

bra

bna

ghi

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

zinc finger (C3HC4-type RING finger) family protein

hydroxyproline-rich glycoprotein family protein

protein transport protein SEC31

uncharacterized LOC103841561

uncharacterized LOC103863097

protein transport protein SEC31

protein transport protein SEC31-like

uncharacterized LOC106368072

uncharacterized LOC107925895

uncharacterized LOC121223511

uncharacterized LOC100818532

uncharacterized LOC100819068

uncharacterized LOC100786981

uncharacterized LOC100248215

uncharacterized LOC7464054

uncharacterized LOC7479638

uncharacterized LOC11413293

vacuolar protein-sorting protein bro1-like

uncharacterized LOC101250645

uncharacterized LOC102604829

uncharacterized LOC102584778

uncharacterized LOC107823363

uncharacterized LOC107808132

uncharacterized LOC107802853

uncharacterized LOC4338601

uncharacterized LOC4326504

zinc finger (C3HC4-type RING finger) family protein

uncharacterized LOC103636306

uncharacterized LOC123130197

uncharacterized LOC123072350

uncharacterized LOC123063373

uncharacterized LOC123440276

uncharacterized LOC123445416

uncharacterized LOC8062293

uncharacterized LOC8055825

uncharacterized LOC110431891

uncharacterized LOC100823449

uncharacterized LOC100845784

uncharacterized LOC100826938

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00040	Pentose and glucuronate interconversions	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00040	Pentose and glucuronate interconversions	3
bra00562	Inositol phosphate metabolism	2
bra04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00053	Ascorbate and aldarate metabolism	2
sot00520	Amino sugar and nucleotide sugar metabolism	2
sot01240	Biosynthesis of cofactors	2
sot01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00220	Arginine biosynthesis	2
nta00240	Pyrimidine metabolism	2
nta00250	Alanine, aspartate and glutamate metabolism	2
nta01240	Biosynthesis of cofactors	2
nta00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00040	Pentose and glucuronate interconversions	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00460	Cyanoamino acid metabolism	2
nta00500	Starch and sucrose metabolism	2
nta00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03030	DNA replication	2
hvu03410	Base excision repair	2
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04145	Phagosome	2
hvu04517	IgSF CAM signaling	2
hvu04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04814	Motor proteins	2

Expression

Expression pattern

Entrez Gene ID^*

820250

824826

103847296

103841561

103863097

106434584

106418312

106368072

107925895

121223511

100818532

100819068

100786981

100248215

7464054

7479638

11413293

101260385

101250645

102604829

102584778

107823363

107808132

107802853

4338601

4326504

100501523

103636306

123130197

123072350

123063373

123440276

123445416

8062293

8055825

110431891

100823449

100845784

100826938

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	cit
Paralog	10	3	3	2	3	1	2	1	2	2	3	2	2	3	2	3	3	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G10810 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G10810 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**