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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G16780   Ribosomal protein L19e family protein 
 ath-r.7   AT3G16780   Ribosomal protein L19e family protein 
 ath-m.9   AT3G16780   Ribosomal protein L19e family protein 
 ath-e.2   AT3G16780   Ribosomal protein L19e family protein 
 ath-m.4.bio   AT3G16780   Ribosomal protein L19e family protein 
 ath-m.4.hor   AT3G16780   Ribosomal protein L19e family protein 
 ath-m.4.lig   AT3G16780   Ribosomal protein L19e family protein 
 ath-m.4.str   AT3G16780   Ribosomal protein L19e family protein 
 ath-m.4.tis   AT3G16780   Ribosomal protein L19e family protein 
 ath-u.5   AT4G02230   Ribosomal protein L19e family protein 
 ath-u.5   emb2386   Ribosomal protein L19e family protein 
 gma-u.5   100499883   uncharacterized LOC100499883 
 gma-u.5   100818880   60S ribosomal protein L19 
 gma-u.5   100816734   60S ribosomal protein L19-3 
 vvi-u.5   100246855   60S ribosomal protein L19-like 
 vvi-u.5   100267158   60S ribosomal protein L19-like 
 ppo-u.5   7493602   60S ribosomal protein L19-3 
 ppo-u.5   18106534   60S ribosomal protein L19-3 
 ppo-u.5   18105615   60S ribosomal protein L19-1 
 mtr-u.5   25499619   60S ribosomal protein L19-3 
 mtr-u.5   11420015   60S ribosomal protein L19-3 
 sly-u.5   101261236   large ribosomal subunit protein eL19y 
 sly-u.5   101265769   large ribosomal subunit protein eL19y 
 osa-u.5   4333317   large ribosomal subunit protein eL19x 
 osa-u.5   4332773   large ribosomal subunit protein eL19x 
 zma-u.5   100284115   60S ribosomal protein L19-3 
 zma-u.5   100282430   60S ribosomal protein L19-3 
 zma-u.5   542284   60S ribosomal protein L19-3 

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Top 50 coexpressed genes to AT3G16780 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G16780 (ath-u.5 coexpression data)

CoexMap"820931"


athAT3G16780 | Entrez gene ID : 820931      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 11 3 2 3 2 2 2 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0006412 [list] [network] translation  (926 genes)  IEA  
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (124 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_188300.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_188300.1)
Subcellular
localization
TargetP
other 5  (predict for NP_188300.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G16780

.
ath-r.7
for
AT3G16780

.
ath-m.9
for
AT3G16780

.
ath-e.2
for
AT3G16780

.
ath-m.4.bio
for
AT3G16780

.
ath-m.4.hor
for
AT3G16780

.
ath-m.4.lig
for
AT3G16780

.
ath-m.4.str
for
AT3G16780

.
ath-m.4.tis
for
AT3G16780

.
ath-u.5
for
AT4G02230

.
ath-u.5
for
emb2386

.
gma-u.5
for
100499883

.
gma-u.5
for
100818880

.
gma-u.5
for
100816734

.
vvi-u.5
for
100246855

.
vvi-u.5
for
100267158

.
ppo-u.5
for
7493602

.
ppo-u.5
for
18106534

.
ppo-u.5
for
18105615

.
mtr-u.5
for
25499619

.
mtr-u.5
for
11420015

.
sly-u.5
for
101261236

.
sly-u.5
for
101265769

.
osa-u.5
for
4333317

.
osa-u.5
for
4332773

.
zma-u.5
for
100284115

.
zma-u.5
for
100282430

.
zma-u.5
for
542284

.


Ortholog ID: 1504
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT3G16780 AT4G02230 LOC100816734 LOC100527501 LOC101265769 LOC101261236 LOC4333317 LOC4332773 LOC100216841 LOC100282430 LOC103858770 LOC103836766 LOC100246855 LOC100267158 LOC7485196 LOC18105615 LOC11420015 LOC25499619 LOC123187503 LOC123448684 LOC123424734 LOC107926554 LOC107933243 LOC106438669 LOC106369297 CHLRE_02g075700v5 LOC8078633 LOC8076075 LOC102577496 LOC102578588 LOC102627110 LOC102616399 LOC100831315 LOC100821238 LOC142179337 LOC107764242
Function* Ribosomal protein L19e family protein Ribosomal protein L19e family protein 60S ribosomal protein L19-3 uncharacterized LOC100527501 large ribosomal subunit protein eL19y large ribosomal subunit protein eL19y large ribosomal subunit protein eL19x large ribosomal subunit protein eL19x Ribosomal protein L19 60S ribosomal protein L19-3 60S ribosomal protein L19-3 60S ribosomal protein L19-1 60S ribosomal protein L19-like 60S ribosomal protein L19-like 60S ribosomal protein L19-3 60S ribosomal protein L19-1 60S ribosomal protein L19-3 60S ribosomal protein L19-3 60S ribosomal protein L19-1 60S ribosomal protein L19-3-like 60S ribosomal protein L19-1-like 60S ribosomal protein L19-2 60S ribosomal protein L19-1 60S ribosomal protein L19-3-like 60S ribosomal protein L19-1 ribosomal protein L19 60S ribosomal protein L19-1 60S ribosomal protein L19-1 60S ribosomal protein L19-like protein 60S ribosomal protein L19-3-like 60S ribosomal protein L19-1 60S ribosomal protein L19-2 60S ribosomal protein L19-1 60S ribosomal protein L19-3 large ribosomal subunit protein eL19y-like large ribosomal subunit protein eL19y
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 14
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 13
gma01240 Biosynthesis of cofactors 3
gma00230 Purine metabolism 2
gma00730 Thiamine metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 15
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 14
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 13
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 12
bdi01230 Biosynthesis of amino acids 4
bdi00220 Arginine biosynthesis 2
bdi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
nta03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 11
nta03040 Spliceosome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820931 828099 100816734 100527501 101265769 101261236 4333317 4332773 100216841 100282430 103858770 103836766 100246855 100267158 7485196 18105615 11420015 25499619 123187503 123448684 123424734 107926554 107933243 106438669 106369297 5727201 8078633 8076075 102577496 102578588 102627110 102616399 100831315 100821238 142179337 107764242
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