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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   MSH2   MUTS homolog 2 
 ath-r.7   MSH2   MUTS homolog 2 
 ath-m.9   MSH2   MUTS homolog 2 
 ath-e.2   MSH2   MUTS homolog 2 
 ath-m.4.bio   MSH2   MUTS homolog 2 
 ath-m.4.hor   MSH2   MUTS homolog 2 
 ath-m.4.lig   MSH2   MUTS homolog 2 
 ath-m.4.str   MSH2   MUTS homolog 2 
 ath-m.4.tis   MSH2   MUTS homolog 2 
 bra-r.6   103859754   DNA mismatch repair protein MSH2 
 bna-r.1   106360022   DNA mismatch repair protein MSH2 
 bna-r.1   106439551   DNA mismatch repair protein MSH2 
 ghi-r.1   107897679   DNA mismatch repair protein MSH2 
 ghi-r.1   107888755   DNA mismatch repair protein MSH2 
 cit-r.1   102614656   DNA mismatch repair protein MSH2 
 gma-u.5   100792272   DNA mismatch repair protein MSH2 
 vvi-u.5   MSH2   mismatch repair protein 
 ppo-u.5   7484706   DNA mismatch repair protein MSH2 
 mtr-u.5   25493936   DNA mismatch repair protein MSH2 
 sly-u.5   MSH2   mismatch repair protein 
 sot-r.1   102598532   DNA mismatch repair protein MSH2 
 nta-r.1   107772597   DNA mismatch repair protein MSH2 
 nta-r.1   107825761   DNA mismatch repair protein MSH2 
 osa-u.5   4338271   DNA mismatch repair protein MSH2 
 zma-u.5   100279876   MutS homolog 1 
 tae-r.2   123043304   DNA mismatch repair protein MSH2 
 tae-r.2   123117237   DNA mismatch repair protein MSH2 
 tae-r.2   542978   DNA mismatch repair protein MSH2 
 hvu-r.1   123428016   DNA mismatch repair protein MSH2 
 sbi-r.1   8060623   DNA mismatch repair protein MSH2 
 bdi-r.1   100842311   DNA mismatch repair protein MSH2 
 cre-r.1   CHLRE_01g003463v5   uncharacterized protein 

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Top 50 coexpressed genes to MSH2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to MSH2 (ath-u.5 coexpression data)

CoexMap"821383"


athMSH2 | Entrez gene ID : 821383      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03430 [list] [network] Mismatch repair (32 genes)
GO BP
GO:0045128 [list] [network] negative regulation of reciprocal meiotic recombination  (4 genes)  IMP  
GO:0006290 [list] [network] pyrimidine dimer repair  (8 genes)  IMP  
GO:0006298 [list] [network] mismatch repair  (12 genes)  IMP  
GO CC
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0030983 [list] [network] mismatched DNA binding  (3 genes)  IDA  
GO:0003684 [list] [network] damaged DNA binding  (10 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_566804.3 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for NP_566804.3)
Subcellular
localization
TargetP
other 9  (predict for NP_566804.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
MSH2
ath-r.7
for
MSH2
ath-m.9
for
MSH2
ath-e.2
for
MSH2
ath-m.4.bio
for
MSH2
ath-m.4.hor
for
MSH2
ath-m.4.lig
for
MSH2
ath-m.4.str
for
MSH2
ath-m.4.tis
for
MSH2
bra-r.6
for
103859754
bna-r.1
for
106360022
bna-r.1
for
106439551
ghi-r.1
for
107897679
ghi-r.1
for
107888755
cit-r.1
for
102614656
gma-u.5
for
100792272
vvi-u.5
for
MSH2
ppo-u.5
for
7484706
mtr-u.5
for
25493936
sly-u.5
for
MSH2
sot-r.1
for
102598532
nta-r.1
for
107772597
nta-r.1
for
107825761
osa-u.5
for
4338271
zma-u.5
for
100279876
tae-r.2
for
123043304
tae-r.2
for
123117237
tae-r.2
for
542978
hvu-r.1
for
123428016
sbi-r.1
for
8060623
bdi-r.1
for
100842311
cre-r.1
for
CHLRE_01g003463v5


Ortholog ID: 10784
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol MSH2 LOC103859754 LOC106360022 LOC106439551 LOC107897679 LOC107888755 LOC102614656 LOC100792272 MSH2 LOC7484706 LOC25493936 MSH2 LOC102598532 LOC107772597 LOC107825761 LOC4338271 LOC100279876 LOC123043304 LOC123117237 LOC542978 LOC123428016 LOC8060623 LOC100842311 CHLRE_01g003463v5
Function* MUTS homolog 2 DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 mismatch repair protein DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 mismatch repair protein DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 MutS homolog 1 DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 DNA mismatch repair protein MSH2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 7
ath03430 Mismatch repair 4
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03430 Mismatch repair 5
bra03030 DNA replication 4
bra03410 Base excision repair 3
bra03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03430 Mismatch repair 11
bna03030 DNA replication 9
bna03410 Base excision repair 4
bna03420 Nucleotide excision repair 4
bna03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 8
bna03430 Mismatch repair 8
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 4
ghi03082 ATP-dependent chromatin remodeling 2
ghi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 4
ghi03082 ATP-dependent chromatin remodeling 2
ghi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
cit03013 Nucleocytoplasmic transport 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03430 Mismatch repair 8
vvi03030 DNA replication 7
vvi03420 Nucleotide excision repair 7
vvi03410 Base excision repair 5
vvi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 5
ppo00230 Purine metabolism 3
ppo00240 Pyrimidine metabolism 3
ppo00480 Glutathione metabolism 3
ppo01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03430 Mismatch repair 3
mtr03030 DNA replication 2
mtr03410 Base excision repair 2
mtr03420 Nucleotide excision repair 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 10
sly03430 Mismatch repair 3
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 5
sot03430 Mismatch repair 4
sot03440 Homologous recombination 3
sot03410 Base excision repair 3
sot03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 4
nta04141 Protein processing in endoplasmic reticulum 2
nta00566 Sulfoquinovose metabolism 2
nta04016 MAPK signaling pathway - plant 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 4
nta04141 Protein processing in endoplasmic reticulum 2
nta00566 Sulfoquinovose metabolism 2
nta04016 MAPK signaling pathway - plant 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03430 Mismatch repair 6
zma03030 DNA replication 5
zma03410 Base excision repair 4
zma03420 Nucleotide excision repair 4
zma00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 7
tae03430 Mismatch repair 5
tae00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 7
tae03430 Mismatch repair 6
tae00270 Cysteine and methionine metabolism 4
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 11
tae03430 Mismatch repair 5
tae00270 Cysteine and methionine metabolism 4
tae03410 Base excision repair 4
tae03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi00480 Glutathione metabolism 2
bdi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 8
cre03410 Base excision repair 6
cre03420 Nucleotide excision repair 5
cre03430 Mismatch repair 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821383 103859754 106360022 106439551 107897679 107888755 102614656 100792272 100268052 7484706 25493936 100462655 102598532 107772597 107825761 4338271 100279876 123043304 123117237 542978 123428016 8060623 100842311 5723679
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