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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   JMJD5   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-r.7   JMJD5   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-m.9   JMJD5   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-e.2   JMJD5   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-m.4.bio   JMJD5   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-m.4.hor   JMJD5   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-m.4.lig   JMJD5   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-m.4.str   JMJD5   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-m.4.tis   JMJD5   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 bra-r.6   JMJ30   lysine-specific demethylase JMJ30 
 bna-r.1   125603096   lysine-specific demethylase JMJ30-like 
 bna-r.1   106451862   lysine-specific demethylase JMJ30 
 bna-r.1   106401865   lysine-specific demethylase JMJ30 
 ghi-r.1   107962150   lysine-specific demethylase JMJ30 
 ghi-r.1   107889882   lysine-specific demethylase JMJ30 
 cit-r.1   102619679   lysine-specific demethylase JMJ30 
 gma-u.5   100779376   lysine-specific demethylase JMJ30 
 gma-u.5   100813075   lysine-specific demethylase JMJ30 
 vvi-u.5   100267241   lysine-specific demethylase JMJ30 
 ppo-u.5   7496047   lysine-specific demethylase JMJ30 
 mtr-u.5   25492610   lysine-specific demethylase JMJ30 
 sly-u.5   JMJ524   JmjC-domain protein JMJ524 
 sot-r.1   102591001   putative lysine-specific demethylase JMJD5 
 nta-r.1   107763337   lysine-specific demethylase JMJ30 
 nta-r.1   107809124   lysine-specific demethylase JMJ30-like 
 osa-u.5   9269734   lysine-specific demethylase JMJ30 
 osa-u.5   4347435   lysine-specific demethylase JMJ30 
 zma-u.5   103631760   uncharacterized LOC103631760 
 tae-r.2   123104170   lysine-specific demethylase JMJ30 
 tae-r.2   123112409   lysine-specific demethylase JMJ30 
 tae-r.2   123120670   lysine-specific demethylase JMJ30 
 hvu-r.1   123399390   lysine-specific demethylase JMJ30-like 
 hvu-r.1   123411037   lysine-specific demethylase JMJ30-like 
 sbi-r.1   8064848   lysine-specific demethylase JMJ30 
 sbi-r.1   8055179   lysine-specific demethylase JMJ30 
 bdi-r.1   100835429   lysine-specific demethylase JMJ30 
 bdi-r.1   100831374   lysine-specific demethylase JMJ30 
 cre-r.1   CHLRE_11g467768v5   uncharacterized protein 

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Top 50 coexpressed genes to JMJD5 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to JMJD5 (ath-u.5 coexpression data)

CoexMap"821629"


athJMJD5 | Entrez gene ID : 821629      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 1 1 1 1 2 2 1 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010378 [list] [network] temperature compensation of the circadian clock  (4 genes)  IMP  
GO:1900457 [list] [network] regulation of brassinosteroid mediated signaling pathway  (23 genes)  IMP  
GO:1990110 [list] [network] callus formation  (29 genes)  IMP  
GO:0080022 [list] [network] primary root development  (40 genes)  IMP  
GO:0042752 [list] [network] regulation of circadian rhythm  (59 genes)  IMP  
GO:0009741 [list] [network] response to brassinosteroid  (101 genes)  IEP  
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (101 genes)  IMP  
GO:1900140 [list] [network] regulation of seedling development  (112 genes)  IMP  
GO:0045814 [list] [network] negative regulation of gene expression, epigenetic  (117 genes)  IDA  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IMP  
GO:0009787 [list] [network] regulation of abscisic acid-activated signaling pathway  (135 genes)  IMP  
GO:0040029 [list] [network] epigenetic regulation of gene expression  (174 genes)  IDA IMP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP IMP  
GO:0009266 [list] [network] response to temperature stimulus  (682 genes)  IDA IMP  
GO:0010468 [list] [network] regulation of gene expression  (2062 genes)  IMP  
GO CC
GO:0000791 [list] [network] euchromatin  (13 genes)  IDA  
GO:0005783 [list] [network] endoplasmic reticulum  (897 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0140684 [list] [network] histone H3K9me2/H3K9me3 demethylase activity  (1 genes)  IMP  
GO:0061628 [list] [network] histone H3K27me3 reader activity  (2 genes)  IDA  
GO:0046975 [list] [network] histone H3K36 methyltransferase activity  (4 genes)  IDA  
GO:0071558 [list] [network] histone H3K27me2/H3K27me3 demethylase activity  (5 genes)  IDA IMP  
GO:0043565 [list] [network] sequence-specific DNA binding  (875 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001030733.1 [sequence] [blastp]
NP_001327066.1 [sequence] [blastp]
NP_001327067.1 [sequence] [blastp]
NP_566667.1 [sequence] [blastp]
NP_850617.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  cyto_pero 3  (predict for NP_001030733.1)
cyto 4,  nucl 4,  nucl_plas 3,  plas 1  (predict for NP_001327066.1)
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for NP_001327067.1)
nucl 4,  cyto 4,  chlo 1,  mito 1,  extr 1,  chlo_mito 1  (predict for NP_566667.1)
nucl 5,  cyto 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_850617.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001030733.1)
other 7  (predict for NP_001327066.1)
other 7  (predict for NP_001327067.1)
other 7  (predict for NP_566667.1)
other 7  (predict for NP_850617.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
JMJD5
ath-r.7
for
JMJD5
ath-m.9
for
JMJD5
ath-e.2
for
JMJD5
ath-m.4.bio
for
JMJD5
ath-m.4.hor
for
JMJD5
ath-m.4.lig
for
JMJD5
ath-m.4.str
for
JMJD5
ath-m.4.tis
for
JMJD5
bra-r.6
for
JMJ30
bna-r.1
for
125603096
bna-r.1
for
106451862
bna-r.1
for
106401865
ghi-r.1
for
107962150
ghi-r.1
for
107889882
cit-r.1
for
102619679
gma-u.5
for
100779376
gma-u.5
for
100813075
vvi-u.5
for
100267241
ppo-u.5
for
7496047
mtr-u.5
for
25492610
sly-u.5
for
JMJ524
sot-r.1
for
102591001
nta-r.1
for
107763337
nta-r.1
for
107809124
osa-u.5
for
9269734
osa-u.5
for
4347435
zma-u.5
for
103631760
tae-r.2
for
123104170
tae-r.2
for
123112409
tae-r.2
for
123120670
hvu-r.1
for
123399390
hvu-r.1
for
123411037
sbi-r.1
for
8064848
sbi-r.1
for
8055179
bdi-r.1
for
100835429
bdi-r.1
for
100831374
cre-r.1
for
CHLRE_11g467768v5


Ortholog ID: 5311
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa osa zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol JMJD5 JMJ30 LOC125603096 LOC106451862 LOC106401865 LOC107962150 LOC107889882 LOC102619679 LOC100779376 LOC100813075 LOC100267241 LOC7496047 LOC25492610 JMJ524 LOC102591001 LOC107763337 LOC107809124 LOC9269734 LOC4347435 LOC103631760 LOC123120670 LOC123151191 LOC123165350 LOC123399390 LOC123411037 LOC8064848 LOC8055179 LOC100835429 LOC100831374 CHLRE_11g467768v5
Function* 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30-like lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 JmjC-domain protein JMJ524 putative lysine-specific demethylase JMJD5 lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30-like lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 uncharacterized LOC103631760 lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30-like lysine-specific demethylase JMJ30-like lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 lysine-specific demethylase JMJ30 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 6
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 3
osa00730 Thiamine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 5
sbi00730 Thiamine metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821629 103869271 125603096 106451862 106401865 107962150 107889882 102619679 100779376 100813075 100267241 7496047 25492610 101251119 102591001 107763337 107809124 9269734 4347435 103631760 123120670 123151191 123165350 123399390 123411037 8064848 8055179 100835429 100831374 5725072
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