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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   BIR6   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-r.7   BIR6   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.9   BIR6   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   BIR6   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.bio   BIR6   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.hor   BIR6   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.lig   BIR6   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.str   BIR6   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.tis   BIR6   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100815857   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 gma-u.5   100801257   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 vvi-u.5   100246746   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 ppo-u.5   7453806   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 mtr-u.5   25493706   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 mtr-u.5   25493709   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 sly-u.5   101244173   pentatricopeptide repeat-containing protein 
 osa-u.5   4323841   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 zma-u.5   100193771   uncharacterized LOC100193771 
 zma-u.5   100303930   uncharacterized LOC100303930 

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Top 50 coexpressed genes to BIR6 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to BIR6 (ath-u.5 coexpression data)

CoexMap"823983"


athBIR6 | Entrez gene ID : 823983      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 2 1 1 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0008380 [list] [network] RNA splicing  (195 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  IDA ISM  
GO MF
Protein NP_190408.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  mito 1  (predict for NP_190408.1)
Subcellular
localization
TargetP
chlo 8,  mito 7  (predict for NP_190408.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
BIR6

.
ath-r.7
for
BIR6

.
ath-m.9
for
BIR6

.
ath-e.2
for
BIR6

.
ath-m.4.bio
for
BIR6

.
ath-m.4.hor
for
BIR6

.
ath-m.4.lig
for
BIR6

.
ath-m.4.str
for
BIR6

.
ath-m.4.tis
for
BIR6

.
gma-u.5
for
100815857

.
gma-u.5
for
100801257

.
vvi-u.5
for
100246746

.
ppo-u.5
for
7453806

.
mtr-u.5
for
25493706

.
mtr-u.5
for
25493709

.
sly-u.5
for
101244173

.
osa-u.5
for
4323841

.
zma-u.5
for
100193771

.
zma-u.5
for
100303930

.


Ortholog ID: 6890
Species ath gma gma sly osa zma zma bra bra vvi ppo mtr mtr tae tae hvu ghi ghi sbi sot cit bdi nta nta
Symbol BIR6 LOC100801257 LOC100815857 LOC101244173 LOC4323841 LOC100303930 LOC100193771 LOC103873543 LOC103873160 LOC100246746 LOC7453806 LOC25493705 LOC25493706 LOC123080975 LOC123072808 LOC123445676 LOC107922928 LOC107910906 LOC8078052 LOC102583268 LOC102624687 LOC100837478 LOC107814104 LOC107772918
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At3g48250, chloroplastic uncharacterized LOC100303930 uncharacterized LOC100193771 pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823983 100801257 100815857 101244173 4323841 100303930 100193771 103873543 103873160 100246746 7453806 25493705 25493706 123080975 123072808 123445676 107922928 107910906 8078052 102583268 102624687 100837478 107814104 107772918
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