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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123063669   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 tae-r.2   123080975   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 tae-r.2   123072808   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 hvu-r.1   123445676   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 bdi-r.1   100837478   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 osa-u.5   4323841   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 zma-u.5   100303930   uncharacterized LOC100303930 
 zma-u.5   100193771   uncharacterized LOC100193771 
 sbi-r.1   8078052   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 ath-u.5   BIR6   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100815857   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 gma-u.5   100801257   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 sly-u.5   101244173   pentatricopeptide repeat-containing protein 
 bra-r.6   103873160   pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like 
 bra-r.6   103873543   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 vvi-u.5   100246746   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 ppo-u.5   7453806   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 mtr-u.5   25493706   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 mtr-u.5   25493707   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 mtr-u.5   25493705   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 ghi-r.1   107922928   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 ghi-r.1   107910906   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 bna-r.1   106399455   pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like 
 bna-r.1   106376603   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 sot-r.1   102583268   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 cit-r.1   102624687   pentatricopeptide repeat-containing protein At3g48250, chloroplastic 
 nta-r.1   107814104   pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like 
 nta-r.1   107772918   pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like 

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Top 50 coexpressed genes to 123063669 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123063669 (tae-r.2 coexpression data)

CoexMap"123063669"


taeLOC123063669 | Entrez gene ID : 123063669    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 1 2 1 1 2 1 2 1 1 3 2 2 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0008380 [list] [network] RNA splicing  (537 genes)  IEA  
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (16249 genes)  IEA  
Protein XP_044343490.1 [sequence] [blastp]
XP_044343491.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 3,  cyto_mito 2,  nucl 1  (predict for XP_044343490.1)
chlo 4,  mito 3,  cyto_mito 2,  nucl 1  (predict for XP_044343491.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_044343490.1)
mito 8  (predict for XP_044343491.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123063669
tae-r.2
for
123080975
tae-r.2
for
123072808
hvu-r.1
for
123445676
bdi-r.1
for
100837478
osa-u.5
for
4323841
zma-u.5
for
100303930
zma-u.5
for
100193771
sbi-r.1
for
8078052
ath-u.5
for
BIR6
gma-u.5
for
100815857
gma-u.5
for
100801257
sly-u.5
for
101244173
bra-r.6
for
103873160
bra-r.6
for
103873543
vvi-u.5
for
100246746
ppo-u.5
for
7453806
mtr-u.5
for
25493706
mtr-u.5
for
25493707
mtr-u.5
for
25493705
ghi-r.1
for
107922928
ghi-r.1
for
107910906
bna-r.1
for
106399455
bna-r.1
for
106376603
sot-r.1
for
102583268
cit-r.1
for
102624687
nta-r.1
for
107814104
nta-r.1
for
107772918


Ortholog ID: 6890
Species tae tae tae hvu bdi osa zma zma sbi ath gma gma sly bra bra vvi ppo mtr mtr mtr ghi ghi bna sot cit nta nta
Symbol LOC123063669 LOC123080975 LOC123072808 LOC123445676 LOC100837478 LOC4323841 LOC100303930 LOC100193771 LOC8078052 BIR6 LOC100815857 LOC100801257 LOC101244173 LOC103873160 LOC103873543 LOC100246746 LOC7453806 LOC25493706 LOC25493707 LOC25493705 LOC107922928 LOC107910906 LOC106376603 LOC102583268 LOC102624687 LOC107814104 LOC107772918
Function* pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic uncharacterized LOC100303930 uncharacterized LOC100193771 pentatricopeptide repeat-containing protein At3g48250, chloroplastic Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123063669 123080975 123072808 123445676 100837478 4323841 100303930 100193771 8078052 823983 100815857 100801257 101244173 103873160 103873543 100246746 7453806 25493706 25493707 25493705 107922928 107910906 106376603 102583268 102624687 107814104 107772918
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