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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   VLN3   villin 3 
 ath-r.7   VLN3   villin 3 
 ath-m.9   VLN3   villin 3 
 ath-e.2   VLN3   villin 3 
 ath-m.4.bio   VLN3   villin 3 
 ath-m.4.hor   VLN3   villin 3 
 ath-m.4.lig   VLN3   villin 3 
 ath-m.4.str   VLN3   villin 3 
 ath-m.4.tis   VLN3   villin 3 
 ath-u.5   VLN2   villin 2 
 ath-u.5   VLN4   villin 4 
 ath-u.5   VLN5   actin filament bundling protein P-115-ABP protein 
 gma-u.5   100807762   villin-4 
 gma-u.5   100809968   villin-4 
 gma-u.5   100808499   villin-4 
 vvi-u.5   100243579   villin-2 
 vvi-u.5   100254775   villin-4 
 ppo-u.5   7468985   villin-3 
 ppo-u.5   7488953   villin-4 
 ppo-u.5   7496131   villin-3 
 mtr-u.5   11440584   villin-4 
 mtr-u.5   120580940   villin-3 
 mtr-u.5   11431044   villin-4 
 sly-u.5   101268090   villin-2 
 osa-u.5   4332869   villin-2-like 
 osa-u.5   4345036   villin-5-like 
 zma-u.5   103638857   villin-3 
 zma-u.5   103639123   villin-2 
 zma-u.5   103634320   villin-5 

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Top 50 coexpressed genes to VLN3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VLN3 (ath-u.5 coexpression data)

CoexMap"824908"


athVLN3 | Entrez gene ID : 824908      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 12 3 2 3 3 1 2 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0051014 [list] [network] actin filament severing  (3 genes)  IDA  
GO:0051017 [list] [network] actin filament bundle assembly  (20 genes)  IDA IGI  
GO CC
GO:0005884 [list] [network] actin filament  (11 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA ISM  
GO MF
GO:0051015 [list] [network] actin filament binding  (34 genes)  IDA IEA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_001319779.1 [sequence] [blastp]
NP_001325644.1 [sequence] [blastp]
NP_001325645.1 [sequence] [blastp]
NP_001325646.1 [sequence] [blastp]
NP_001325647.1 [sequence] [blastp]
NP_001325648.1 [sequence] [blastp]
NP_001325649.1 [sequence] [blastp]
NP_001325650.1 [sequence] [blastp]
NP_001325651.1 [sequence] [blastp]
NP_567048.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_001319779.1)
nucl 8,  cyto 1,  vacu 1,  cysk 1  (predict for NP_001325644.1)
nucl 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_001325645.1)
nucl 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_001325646.1)
nucl 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_001325647.1)
nucl 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_001325648.1)
nucl 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_001325649.1)
nucl 9  (predict for NP_001325650.1)
nucl 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_001325651.1)
nucl 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_567048.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001319779.1)
other 8  (predict for NP_001325644.1)
other 8  (predict for NP_001325645.1)
other 8  (predict for NP_001325646.1)
other 8  (predict for NP_001325647.1)
other 8  (predict for NP_001325648.1)
other 8  (predict for NP_001325649.1)
other 8  (predict for NP_001325650.1)
other 8  (predict for NP_001325651.1)
other 8  (predict for NP_567048.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
VLN3

.
ath-r.7
for
VLN3

.
ath-m.9
for
VLN3

.
ath-e.2
for
VLN3

.
ath-m.4.bio
for
VLN3

.
ath-m.4.hor
for
VLN3

.
ath-m.4.lig
for
VLN3

.
ath-m.4.str
for
VLN3

.
ath-m.4.tis
for
VLN3

.
ath-u.5
for
VLN2

.
ath-u.5
for
VLN4

.
ath-u.5
for
VLN5

.
gma-u.5
for
100807762

.
gma-u.5
for
100809968

.
gma-u.5
for
100808499

.
vvi-u.5
for
100243579

.
vvi-u.5
for
100254775

.
ppo-u.5
for
7468985

.
ppo-u.5
for
7488953

.
ppo-u.5
for
7496131

.
mtr-u.5
for
11440584

.
mtr-u.5
for
120580940

.
mtr-u.5
for
11431044

.
sly-u.5
for
101268090

.
osa-u.5
for
4332869

.
osa-u.5
for
4345036

.
zma-u.5
for
103638857

.
zma-u.5
for
103639123

.
zma-u.5
for
103634320

.


Ortholog ID: 593
Species ath ath gma gma sly osa zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre cre sbi sot sot cit cit bdi bdi nta nta
Symbol VLN3 VLN2 LOC100787208 LOC100788765 LOC101259383 LOC4332869 LOC100279855 LOC103845171 LOC103834688 LOC100254775 LOC100243579 LOC7488953 LOC7468985 LOC120580940 LOC11431044 LOC123072515 LOC123072793 LOC123445535 LOC107923501 LOC107917362 LOC106411011 LOC106428163 CHLRE_12g524400v5 CHLRE_12g555550v5 LOC8084077 LOC102581877 LOC102586061 LOC102618228 LOC102611628 LOC100836127 LOC100822654 LOC107813400 LOC107806812
Function* villin 3 villin 2 villin-3 villin-3 villin-4 villin-2-like uncharacterized LOC100279855 villin-5 villin-4 villin-4 villin-2 villin-4 villin-3 villin-3 villin-4 villin-2 villin-3 villin-2-like villin-3 villin-2 villin-4-like villin-2-like uncharacterized protein uncharacterized protein villin-5 villin-2-like villin-2 villin-4 villin-3-like villin-2 villin-5 villin-3-like villin-4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04142 Lysosome 3
ath04144 Endocytosis 2
ath05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath04142 Lysosome 2
ath05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 3
gma03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 4
sly04141 Protein processing in endoplasmic reticulum 3
sly04144 Endocytosis 3
sly05100 Bacterial invasion of epithelial cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 3
osa04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 5
zma05100 Bacterial invasion of epithelial cells 3
zma04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
bra04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi04144 Endocytosis 2
vvi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 3
mtr00190 Oxidative phosphorylation 3
mtr04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae04382 Cornified envelope formation 3
tae03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00531 Glycosaminoglycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 3
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00510 N-Glycan biosynthesis 5
cre04141 Protein processing in endoplasmic reticulum 5
cre00513 Various types of N-glycan biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi04141 Protein processing in endoplasmic reticulum 2
sbi04142 Lysosome 2
sbi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 4
sot04142 Lysosome 3
sot05100 Bacterial invasion of epithelial cells 3
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 4
cit04144 Endocytosis 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 3
nta04016 MAPK signaling pathway - plant 2
nta00564 Glycerophospholipid metabolism 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824908 818773 100787208 100788765 101259383 4332869 100279855 103845171 103834688 100254775 100243579 7488953 7468985 120580940 11431044 123072515 123072793 123445535 107923501 107917362 106411011 106428163 5722520 5719738 8084077 102581877 102586061 102618228 102611628 100836127 100822654 107813400 107806812
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