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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PIL6   phytochrome interacting factor 3-like 6 
 ath-r.7   PIL6   phytochrome interacting factor 3-like 6 
 ath-m.9   PIL6   phytochrome interacting factor 3-like 6 
 ath-e.2   PIL6   phytochrome interacting factor 3-like 6 
 ath-m.4.bio   PIL6   phytochrome interacting factor 3-like 6 
 ath-m.4.hor   PIL6   phytochrome interacting factor 3-like 6 
 ath-m.4.lig   PIL6   phytochrome interacting factor 3-like 6 
 ath-m.4.str   PIL6   phytochrome interacting factor 3-like 6 
 ath-m.4.tis   PIL6   phytochrome interacting factor 3-like 6 
 ath-u.5   PIF4   phytochrome interacting factor 4 
 gma-u.5   100784531   transcription factor PIF4 
 gma-u.5   100800166   transcription factor PIF4 
 gma-u.5   PIF4B   transcription factor PIF4 
 vvi-u.5   100262490   transcription factor PIF4 
 ppo-u.5   7480707   transcription factor PIF4 
 ppo-u.5   7464824   transcription factor PIF4-like 
 mtr-u.5   25490555   transcription factor PIF4 
 sly-u.5   101252303   transcription factor PIF4 

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Top 50 coexpressed genes to PIL6 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PIL6 (ath-u.5 coexpression data)

CoexMap"825075"


athPIL6 | Entrez gene ID : 825075      
Species ath gma vvi ppo mtr sly sot hvu tae cit sbi zma ghi cre bna nta bdi bra osa
Paralog 10 3 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04075 [list] [network] Plant hormone signal transduction (433 genes)
GO BP
GO:0010244 [list] [network] response to low fluence blue light stimulus by blue low-fluence system  (9 genes)  IDA  
GO:0010600 [list] [network] regulation of auxin biosynthetic process  (17 genes)  IDA  
GO:0009585 [list] [network] red, far-red light phototransduction  (20 genes)  IMP  
GO:0009693 [list] [network] ethylene biosynthetic process  (22 genes)  IMP  
GO:0010928 [list] [network] regulation of auxin mediated signaling pathway  (48 genes)  IDA  
GO:0009741 [list] [network] response to brassinosteroid  (101 genes)  IEP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:1990841 [list] [network] promoter-specific chromatin binding  (15 genes)  IPI  
GO:0046983 [list] [network] protein dimerization activity  (446 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001030889.1 [sequence] [blastp]
NP_001030890.1 [sequence] [blastp]
NP_191465.3 [sequence] [blastp]
NP_851021.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001030889.1)
nucl 10  (predict for NP_001030890.1)
nucl 10  (predict for NP_191465.3)
nucl 10  (predict for NP_851021.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_001030889.1)
other 8,  chlo 3  (predict for NP_001030890.1)
other 8,  chlo 3  (predict for NP_191465.3)
other 8,  chlo 3  (predict for NP_851021.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PIL6

.
ath-r.7
for
PIL6

.
ath-m.9
for
PIL6

.
ath-e.2
for
PIL6

.
ath-m.4.bio
for
PIL6

.
ath-m.4.hor
for
PIL6

.
ath-m.4.lig
for
PIL6

.
ath-m.4.str
for
PIL6

.
ath-m.4.tis
for
PIL6

.
ath-u.5
for
PIF4

.
gma-u.5
for
100784531

.
gma-u.5
for
100800166

.
gma-u.5
for
PIF4B

.
vvi-u.5
for
100262490

.
ppo-u.5
for
7480707

.
ppo-u.5
for
7464824

.
mtr-u.5
for
25490555

.
sly-u.5
for
101252303

.


Ortholog ID: 10045
Species ath ath gma gma sly bra bra vvi ppo ppo mtr ghi ghi bna bna sot cit nta nta
Symbol PIF4 PIL6 PIF4A PIF4B LOC101252303 LOC103858039 LOC103866034 LOC100262490 LOC7464824 LOC7480707 LOC25490555 LOC107888469 LOC107939027 LOC106368315 LOC106388298 LOC102604886 LOC102626817 LOC107793439 LOC107811765
Function* phytochrome interacting factor 4 phytochrome interacting factor 3-like 6 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4-like transcription factor PIF4 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4 transcription factor PIF5 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4-like transcription factor PIF4-like transcription factor PIF4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
gma02010 ABC transporters 4
gma04981 Folate transport and metabolism 4
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 5
bra00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 7
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 7
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 6
bna04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00904 Diterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
nta00906 Carotenoid biosynthesis 2
nta04712 Circadian rhythm - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 4
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818903 825075 100811777 100811345 101252303 103858039 103866034 100262490 7464824 7480707 25490555 107888469 107939027 106368315 106388298 102604886 102626817 107793439 107811765
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