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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100262490   transcription factor PIF4 
 vvi-r.5   100262490   transcription factor PIF4 
 vvi-m.5   100262490   transcription factor PIF4 
 ath-u.5   PIF4   phytochrome interacting factor 4 
 ath-u.5   PIL6   phytochrome interacting factor 3-like 6 
 gma-u.5   PIF4A   transcription factor PIF4 
 gma-u.5   PIF4B   transcription factor PIF4 
 gma-u.5   100800166   transcription factor PIF4 
 ppo-u.5   7480707   transcription factor PIF4 
 ppo-u.5   7464824   transcription factor PIF4-like 
 mtr-u.5   25490555   transcription factor PIF4 
 sly-u.5   101252303   transcription factor PIF4 

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Top 50 coexpressed genes to 100262490 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100262490 (vvi-u.5 coexpression data)

CoexMap"100262490"


vviLOC100262490 | Entrez gene ID : 100262490      
Species vvi ath gma ppo mtr sly bdi hvu bra cit bna sbi ghi osa sot nta cre tae zma
Paralog 3 2 3 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi04075 [list] [network] Plant hormone signal transduction (400 genes)
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1359 genes)  IEA  
GO CC
GO MF
GO:0046983 [list] [network] protein dimerization activity  (449 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (925 genes)  IEA  
Protein XP_002278399.1 [sequence] [blastp]
XP_010657098.1 [sequence] [blastp]
XP_059597137.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_002278399.1)
nucl 10  (predict for XP_010657098.1)
nucl 10  (predict for XP_059597137.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for XP_002278399.1)
other 8,  chlo 3  (predict for XP_010657098.1)
other 8,  chlo 3  (predict for XP_059597137.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100262490
vvi-r.5
for
100262490
vvi-m.5
for
100262490
ath-u.5
for
PIF4
ath-u.5
for
PIL6
gma-u.5
for
PIF4A
gma-u.5
for
PIF4B
gma-u.5
for
100800166
ppo-u.5
for
7480707
ppo-u.5
for
7464824
mtr-u.5
for
25490555
sly-u.5
for
101252303


Ortholog ID: 10045
Species vvi ath ath gma gma bra bra ppo ppo mtr ghi ghi bna bna cit sly sot nta nta
Symbol LOC100262490 PIF4 PIL6 PIF4A PIF4B LOC103858039 LOC103866034 LOC7464824 LOC7480707 LOC25490555 LOC107888469 LOC107939027 LOC106368315 LOC106388298 LOC102626817 LOC101252303 LOC102604886 LOC107793439 LOC107811765
Function* transcription factor PIF4 phytochrome interacting factor 4 phytochrome interacting factor 3-like 6 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4-like transcription factor PIF4 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4 transcription factor PIF5 transcription factor PIF4 transcription factor PIF4-like transcription factor PIF4 transcription factor PIF4 transcription factor PIF4-like transcription factor PIF4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
gma02010 ABC transporters 4
gma04981 Folate transport and metabolism 4
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 5
bra00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 7
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 7
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 6
bna04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00904 Diterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
nta00906 Carotenoid biosynthesis 2
nta04712 Circadian rhythm - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 4
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100262490 818903 825075 100811777 100811345 103858039 103866034 7464824 7480707 25490555 107888469 107939027 106368315 106388298 102626817 101252303 102604886 107793439 107811765
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