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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   PIF4A   transcription factor PIF4 
 gma-r.7   PIF4A   transcription factor PIF4 
 gma-u.5   100784531   transcription factor PIF4 
 gma-u.5   100800166   transcription factor PIF4 
 gma-u.5   PIF4B   transcription factor PIF4 
 mtr-u.5   25490555   transcription factor PIF4 
 ppo-u.5   7480707   transcription factor PIF4 
 ppo-u.5   7464824   transcription factor PIF4-like 
 ath-u.5   PIF4   phytochrome interacting factor 4 
 ath-u.5   PIL6   phytochrome interacting factor 3-like 6 
 bra-r.6   103866034   transcription factor PIF4 
 bra-r.6   103858039   transcription factor PIF4 
 bra-r.6   103841766   transcription factor PIF5 
 vvi-u.5   100262490   transcription factor PIF4 
 ghi-r.1   107939027   transcription factor PIF4 
 ghi-r.1   107888469   transcription factor PIF4 
 bna-r.1   111205541   transcription factor PIF4-like 
 bna-r.1   111200351   transcription factor PIF5-like 
 bna-r.1   106388298   transcription factor PIF4 
 cit-r.1   102626817   transcription factor PIF4-like 
 sly-u.5   101252303   transcription factor PIF4 
 sot-r.1   102604886   transcription factor PIF4 
 nta-r.1   107793439   transcription factor PIF4-like 
 nta-r.1   107811765   transcription factor PIF4 

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Top 50 coexpressed genes to PIF4A (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PIF4A (gma-u.5 coexpression data)

CoexMap"100811777"


gmaPIF4A | Entrez gene ID : 100811777      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta bdi osa tae zma cre sbi hvu
Paralog 5 1 2 2 3 1 2 3 1 1 1 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx04075 [list] [network] Plant hormone signal transduction (888 genes)
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (3122 genes)  IEA  
GO CC
GO MF
GO:0046983 [list] [network] protein dimerization activity  (899 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (2313 genes)  IEA  
Protein NP_001364086.1 [sequence] [blastp]
XP_006575634.1 [sequence] [blastp]
XP_040862306.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001364086.1)
nucl 10  (predict for XP_006575634.1)
nucl 10  (predict for XP_040862306.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_001364086.1)
other 8,  chlo 3  (predict for XP_006575634.1)
other 8,  chlo 3  (predict for XP_040862306.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
PIF4A
gma-r.7
for
PIF4A
gma-u.5
for
100784531
gma-u.5
for
100800166
gma-u.5
for
PIF4B
mtr-u.5
for
25490555
ppo-u.5
for
7480707
ppo-u.5
for
7464824
ath-u.5
for
PIF4
ath-u.5
for
PIL6
bra-r.6
for
103866034
bra-r.6
for
103858039
bra-r.6
for
103841766
vvi-u.5
for
100262490
ghi-r.1
for
107939027
ghi-r.1
for
107888469
bna-r.1
for
111205541
bna-r.1
for
111200351
bna-r.1
for
106388298
cit-r.1
for
102626817
sly-u.5
for
101252303
sot-r.1
for
102604886
nta-r.1
for
107793439
nta-r.1
for
107811765


Ortholog ID: 10045
Species gma gma gma mtr ppo ppo ath ath bra bra bra vvi ghi ghi bna bna bna cit sly sot nta nta
Symbol PIF4A LOC100784531 PIF4B LOC25490555 LOC7480707 LOC7464824 PIF4 PIL6 LOC103866034 LOC103858039 LOC103841766 LOC100262490 LOC107939027 LOC107888469 LOC111200351 LOC106388298 LOC106368315 LOC102626817 LOC101252303 LOC102604886 LOC107793439 LOC107811765
Function* transcription factor PIF4 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4-like phytochrome interacting factor 4 phytochrome interacting factor 3-like 6 transcription factor PIF4 transcription factor PIF4 transcription factor PIF5 transcription factor PIF4 transcription factor PIF4 transcription factor PIF4 transcription factor PIF5-like transcription factor PIF4 transcription factor PIF5 transcription factor PIF4-like transcription factor PIF4 transcription factor PIF4 transcription factor PIF4-like transcription factor PIF4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
gma02010 ABC transporters 4
gma04981 Folate transport and metabolism 4
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 5
bra00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 6
bra04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 7
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 7
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 6
bna04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00904 Diterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
nta00906 Carotenoid biosynthesis 2
nta04712 Circadian rhythm - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 4
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100811777 100784531 100811345 25490555 7480707 7464824 818903 825075 103866034 103858039 103841766 100262490 107939027 107888469 111200351 106388298 106368315 102626817 101252303 102604886 107793439 107811765
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