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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CRY1   cryptochrome 1 
 ath-r.7   CRY1   cryptochrome 1 
 ath-m.9   CRY1   cryptochrome 1 
 ath-e.2   CRY1   cryptochrome 1 
 ath-m.4.bio   CRY1   cryptochrome 1 
 ath-m.4.hor   CRY1   cryptochrome 1 
 ath-m.4.lig   CRY1   cryptochrome 1 
 ath-m.4.str   CRY1   cryptochrome 1 
 ath-m.4.tis   CRY1   cryptochrome 1 
 ath-u.5   CRY2   cryptochrome 2 
 gma-u.5   CRY1a   cryptochrome 1 
 gma-u.5   100786551   cryptochrome-1-like 
 gma-u.5   100797839   cryptochrome-1-like 
 vvi-u.5   100254022   cryptochrome-1 
 vvi-u.5   100247664   cryptochrome-1 
 ppo-u.5   7486597   cryptochrome-1 
 ppo-u.5   18102473   cryptochrome-1 
 ppo-u.5   7495156   cryptochrome-1 
 mtr-u.5   11418875   cryptochrome-1 
 mtr-u.5   25484452   cryptochrome-1 
 mtr-u.5   11428875   cryptochrome-1 
 sly-u.5   Cry1b   cryptochrome 1b 
 sly-u.5   CRY2   cryptochrome 2 
 sly-u.5   CRY1a   cryptochrome 1 
 osa-u.5   9270575   cryptochrome-1 
 osa-u.5   4329738   cryptochrome-1 
 osa-u.5   4336008   cryptochrome-1 
 zma-u.5   100502533   cryptochrome 2 
 zma-u.5   100194126   cryptochrome2 

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Top 50 coexpressed genes to CRY1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CRY1 (ath-u.5 coexpression data)

CoexMap"826470"


athCRY1 | Entrez gene ID : 826470      
Species ath gma vvi ppo mtr sly osa zma nta bna tae bdi sot bra sbi hvu cit cre ghi
Paralog 10 3 2 3 3 3 3 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04712 [list] [network] Circadian rhythm - plant (43 genes)
GO BP
GO:1901529 [list] [network] positive regulation of anion channel activity  (1 genes)  IMP  
GO:0071000 [list] [network] response to magnetism  (2 genes)  IDA IMP  
GO:0010617 [list] [network] circadian regulation of calcium ion oscillation  (3 genes)  IMP  
GO:1902448 [list] [network] positive regulation of shade avoidance  (4 genes)  IMP  
GO:0010343 [list] [network] singlet oxygen-mediated programmed cell death  (5 genes)  IMP  
GO:0072387 [list] [network] flavin adenine dinucleotide metabolic process  (5 genes)  IDA IMP ISS  
GO:1901672 [list] [network] positive regulation of systemic acquired resistance  (6 genes)  IMP  
GO:0010244 [list] [network] response to low fluence blue light stimulus by blue low-fluence system  (9 genes)  IEP IMP  
GO:1901332 [list] [network] negative regulation of lateral root development  (9 genes)  IMP  
GO:1902347 [list] [network] response to strigolactone  (9 genes)  IMP  
GO:0010310 [list] [network] regulation of hydrogen peroxide metabolic process  (13 genes)  IDA  
GO:0010117 [list] [network] photoprotection  (14 genes)  IMP  
GO:1901371 [list] [network] regulation of leaf morphogenesis  (18 genes)  IMP  
GO:0009583 [list] [network] detection of light stimulus  (22 genes)  IMP  
GO:0009785 [list] [network] blue light signaling pathway  (22 genes)  TAS  
GO:0009638 [list] [network] phototropism  (26 genes)  IMP  
GO:0046283 [list] [network] anthocyanin-containing compound metabolic process  (26 genes)  IMP  
GO:1900426 [list] [network] positive regulation of defense response to bacterium  (30 genes)  IMP  
GO:2000652 [list] [network] regulation of secondary cell wall biogenesis  (34 genes)  IDA  
GO:0010218 [list] [network] response to far red light  (57 genes)  IMP  
GO:0009646 [list] [network] response to absence of light  (58 genes)  IMP  
GO:0042752 [list] [network] regulation of circadian rhythm  (59 genes)  IMP  
GO:0010118 [list] [network] stomatal movement  (63 genes)  IGI IMP  
GO:2000377 [list] [network] regulation of reactive oxygen species metabolic process  (65 genes)  IDA  
GO:0009644 [list] [network] response to high light intensity  (71 genes)  IMP  
GO:0010114 [list] [network] response to red light  (73 genes)  IMP  
GO:0010075 [list] [network] regulation of meristem growth  (75 genes)  IGI  
GO:0009640 [list] [network] photomorphogenesis  (77 genes)  IMP  
GO:0051510 [list] [network] regulation of unidimensional cell growth  (82 genes)  IMP  
GO:0009637 [list] [network] response to blue light  (94 genes)  IDA IMP NAS  
GO:0060918 [list] [network] auxin transport  (100 genes)  IMP  
GO:0046777 [list] [network] protein autophosphorylation  (119 genes)  IDA  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IEP NAS  
GO:0009414 [list] [network] response to water deprivation  (426 genes)  IGI  
GO:0009266 [list] [network] response to temperature stimulus  (682 genes)  IMP  
GO:0009416 [list] [network] response to light stimulus  (776 genes)  IDA IEP IMP  
GO:0099402 [list] [network] plant organ development  (1167 genes)  IMP  
GO:0010468 [list] [network] regulation of gene expression  (2062 genes)  IMP  
GO CC
GO:0016604 [list] [network] nuclear body  (91 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0009882 [list] [network] blue light photoreceptor activity  (5 genes)  IDA IMP  
GO:0140517 [list] [network] protein-RNA adaptor activity  (5 genes)  IPI  
GO:0071949 [list] [network] FAD binding  (44 genes)  IDA  
GO:0042803 [list] [network] protein homodimerization activity  (237 genes)  IPI  
GO:0005524 [list] [network] ATP binding  (321 genes)  IDA  
GO:0042802 [list] [network] identical protein binding  (414 genes)  IPI  
GO:0004672 [list] [network] protein kinase activity  (737 genes)  IDA  
GO:0016301 [list] [network] kinase activity  (1055 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_567341.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 1,  vacu 1,  nucl 1,  plas 1,  extr 1,  cyto_mito 1,  nucl_plas 1,  E.R._vacu 1  (predict for NP_567341.1)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for NP_567341.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CRY1

.
ath-r.7
for
CRY1

.
ath-m.9
for
CRY1

.
ath-e.2
for
CRY1

.
ath-m.4.bio
for
CRY1

.
ath-m.4.hor
for
CRY1

.
ath-m.4.lig
for
CRY1

.
ath-m.4.str
for
CRY1

.
ath-m.4.tis
for
CRY1

.
ath-u.5
for
CRY2

.
gma-u.5
for
CRY1a

.
gma-u.5
for
100786551

.
gma-u.5
for
100797839

.
vvi-u.5
for
100254022

.
vvi-u.5
for
100247664

.
ppo-u.5
for
7486597

.
ppo-u.5
for
18102473

.
ppo-u.5
for
7495156

.
mtr-u.5
for
11418875

.
mtr-u.5
for
25484452

.
mtr-u.5
for
11428875

.
sly-u.5
for
Cry1b

.
sly-u.5
for
CRY2

.
sly-u.5
for
CRY1a

.
osa-u.5
for
9270575

.
osa-u.5
for
4329738

.
osa-u.5
for
4336008

.
zma-u.5
for
100502533

.
zma-u.5
for
100194126

.


Ortholog ID: 1712
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol CRY1 CRY2 CRY1a LOC100233234 CRY2 Cry1b LOC4329738 LOC9270575 LOC100502533 LOC100277533 CRY1 LOC103836576 LOC100254022 LOC100247664 LOC7486597 LOC18102473 LOC11428875 LOC25484452 LOC100136971 LOC100136972 LOC123426879 LOC123406235 LOC107929100 LOC107905111 LOC111197715 LOC106422131 CHLRE_06g295200v5 LOC110436666 LOC110435145 LOC102580483 LOC102583141 LOC102630424 LOC102609249 LOC100839051 LOC100838321 LOC107813393 LOC107830603
Function* cryptochrome 1 cryptochrome 2 cryptochrome 1 cryptochrome 2 cryptochrome 2 cryptochrome 1b cryptochrome-1 cryptochrome-1 cryptochrome 2 uncharacterized LOC100277533 cryptochrome circadian clock 1 cryptochrome-2 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1-like cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-2 cryptochrome-1 uncharacterized protein cryptochrome-1-like cryptochrome-1-like cryptochrome-1-like cryptochrome-1-like cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 4
ath00900 Terpenoid backbone biosynthesis 3
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 4
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00195 Photosynthesis 3
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04148 Efferocytosis 2
vvi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00280 Valine, leucine and isoleucine degradation 2
ppo00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 8
tae00053 Ascorbate and aldarate metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi00062 Fatty acid elongation 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
sot00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 5
bdi01200 Carbon metabolism 5
bdi04712 Circadian rhythm - plant 2
bdi00710 Carbon fixation by Calvin cycle 2
bdi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 4
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 4
nta04712 Circadian rhythm - plant 2
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826470 839529 100233233 100233234 543596 543688 4329738 9270575 100502533 100277533 103838805 103836576 100254022 100247664 7486597 18102473 11428875 25484452 100136971 100136972 123426879 123406235 107929100 107905111 111197715 106422131 5727125 110436666 110435145 102580483 102583141 102630424 102609249 100839051 100838321 107813393 107830603
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