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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   EMB140   EMBRYO DEFECTIVE 140 
 ath-r.7   EMB140   EMBRYO DEFECTIVE 140 
 ath-m.9   EMB140   EMBRYO DEFECTIVE 140 
 ath-e.2   EMB140   EMBRYO DEFECTIVE 140 
 ath-m.4.bio   EMB140   EMBRYO DEFECTIVE 140 
 ath-m.4.hor   EMB140   EMBRYO DEFECTIVE 140 
 ath-m.4.lig   EMB140   EMBRYO DEFECTIVE 140 
 ath-m.4.str   EMB140   EMBRYO DEFECTIVE 140 
 ath-m.4.tis   EMB140   EMBRYO DEFECTIVE 140 
 gma-u.5   100794881   squamous cell carcinoma antigen recognized by T-cells 3 
 gma-u.5   100801333   squamous cell carcinoma antigen recognized by T-cells 3 
 vvi-u.5   100262646   uncharacterized LOC100262646 
 vvi-u.5   109123390   uncharacterized LOC109123390 
 ppo-u.5   18098375   uncharacterized LOC18098375 
 mtr-u.5   25500419   squamous cell carcinoma antigen recognized by T-cells 3 
 sly-u.5   101254341   uncharacterized LOC101254341 
 osa-u.5   4344498   uncharacterized LOC4344498 
 zma-u.5   100216679   EMBRYO DEFECTIVE 140 

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Top 50 coexpressed genes to EMB140 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB140 (ath-u.5 coexpression data)

CoexMap"828529"


athEMB140 | Entrez gene ID : 828529      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  NAS  
GO:0006396 [list] [network] RNA processing  (588 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0017070 [list] [network] U6 snRNA binding  (2 genes)  IDA  
GO:0003676 [list] [network] nucleic acid binding  (3104 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001328782.1 [sequence] [blastp]
NP_001328783.1 [sequence] [blastp]
NP_194158.3 [sequence] [blastp]
NP_849551.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 2,  chlo 1,  vacu 1  (predict for NP_001328782.1)
nucl 6,  cyto 2,  chlo 1,  vacu 1  (predict for NP_001328783.1)
nucl 9  (predict for NP_194158.3)
nucl 9  (predict for NP_849551.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001328782.1)
other 9  (predict for NP_001328783.1)
other 9  (predict for NP_194158.3)
other 9  (predict for NP_849551.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
EMB140

.
ath-r.7
for
EMB140

.
ath-m.9
for
EMB140

.
ath-e.2
for
EMB140

.
ath-m.4.bio
for
EMB140

.
ath-m.4.hor
for
EMB140

.
ath-m.4.lig
for
EMB140

.
ath-m.4.str
for
EMB140

.
ath-m.4.tis
for
EMB140

.
gma-u.5
for
100794881

.
gma-u.5
for
100801333

.
vvi-u.5
for
100262646

.
vvi-u.5
for
109123390

.
ppo-u.5
for
18098375

.
mtr-u.5
for
25500419

.
sly-u.5
for
101254341

.
osa-u.5
for
4344498

.
zma-u.5
for
100216679

.


Ortholog ID: 9044
Species ath gma gma sly osa zma bra vvi vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol EMB140 LOC100794881 LOC100801333 LOC101254341 LOC4344498 LOC100216679 LOC103861930 LOC109123390 LOC100262646 LOC18098375 LOC25500419 LOC123156255 LOC123147583 LOC123408517 LOC107906307 LOC107914196 LOC106376032 LOC106415583 CHLRE_12g546700v5 LOC110436958 LOC102601827 LOC102627232 LOC100845498 LOC107775018 LOC107803306
Function* EMBRYO DEFECTIVE 140 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 uncharacterized LOC101254341 uncharacterized LOC4344498 EMBRYO DEFECTIVE 140 squamous cell carcinoma antigen recognized by T-cells 3 uncharacterized LOC109123390 uncharacterized LOC100262646 uncharacterized LOC18098375 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 uncharacterized protein squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 uncharacterized LOC102627232 squamous cell carcinoma antigen recognized by T-cells 3 uncharacterized LOC107775018 uncharacterized LOC107803306
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 5
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03082 ATP-dependent chromatin remodeling 3
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828529 100794881 100801333 101254341 4344498 100216679 103861930 109123390 100262646 18098375 25500419 123156255 123147583 123408517 107906307 107914196 106376032 106415583 5719592 110436958 102601827 102627232 100845498 107775018 107803306
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