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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CHLM   magnesium-protoporphyrin IX methyltransferase 
 ath-r.7   CHLM   magnesium-protoporphyrin IX methyltransferase 
 ath-m.9   CHLM   magnesium-protoporphyrin IX methyltransferase 
 ath-e.2   CHLM   magnesium-protoporphyrin IX methyltransferase 
 ath-m.4.bio   CHLM   magnesium-protoporphyrin IX methyltransferase 
 ath-m.4.hor   CHLM   magnesium-protoporphyrin IX methyltransferase 
 ath-m.4.lig   CHLM   magnesium-protoporphyrin IX methyltransferase 
 ath-m.4.str   CHLM   magnesium-protoporphyrin IX methyltransferase 
 ath-m.4.tis   CHLM   magnesium-protoporphyrin IX methyltransferase 
 bra-r.6   103862873   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 bra-r.6   103861527   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 bna-r.1   106346558   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 bna-r.1   106442518   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 bna-r.1   106361731   magnesium protoporphyrin IX methyltransferase, chloroplastic-like 
 ghi-r.1   107953584   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 ghi-r.1   121219290   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 cit-r.1   102629883   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 gma-u.5   100819913   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 gma-u.5   100817017   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 vvi-u.5   100243913   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 ppo-u.5   7454600   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 mtr-u.5   11442990   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 sly-u.5   101267302   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 sot-r.1   102580238   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 nta-r.1   107820682   magnesium protoporphyrin IX methyltransferase, chloroplastic-like 
 nta-r.1   107822811   magnesium protoporphyrin IX methyltransferase, chloroplastic-like 
 osa-u.5   4340015   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 zma-u.5   100273426   uncharacterized LOC100273426 
 tae-r.2   123166960   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 tae-r.2   123150581   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 tae-r.2   123088190   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 hvu-r.1   123408468   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 sbi-r.1   8069064   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 bdi-r.1   100829664   magnesium protoporphyrin IX methyltransferase, chloroplastic 
 cre-r.1   CHLRE_12g498550v5   uncharacterized protein 

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Top 50 coexpressed genes to CHLM (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLM (ath-u.5 coexpression data)

CoexMap"828611"


athCHLM | Entrez gene ID : 828611      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00860 [list] [network] Porphyrin metabolism (57 genes)
GO BP
GO:0015995 [list] [network] chlorophyll biosynthetic process  (27 genes)  IEA IMP TAS  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0046406 [list] [network] magnesium protoporphyrin IX methyltransferase activity  (1 genes)  IDA IMP  
Protein NP_001119052.1 [sequence] [blastp]
NP_001190832.1 [sequence] [blastp]
NP_001328344.1 [sequence] [blastp]
NP_194238.1 [sequence] [blastp]
NP_849438.1 [sequence] [blastp]
NP_849439.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  mito 2,  pero 1  (predict for NP_001119052.1)
chlo 9,  cyto 1,  mito 1  (predict for NP_001190832.1)
chlo 4,  plas 2,  chlo_mito 2,  cyto 1,  nucl_plas 1,  E.R._plas 1,  mito_plas 1  (predict for NP_001328344.1)
chlo 9,  cyto 1,  mito 1  (predict for NP_194238.1)
chlo 9,  cyto 1,  mito 1  (predict for NP_849438.1)
chlo 9,  cyto 1,  mito 1  (predict for NP_849439.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001119052.1)
chlo 8  (predict for NP_001190832.1)
other 2  (predict for NP_001328344.1)
chlo 8  (predict for NP_194238.1)
chlo 8  (predict for NP_849438.1)
chlo 8  (predict for NP_849439.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CHLM
ath-r.7
for
CHLM
ath-m.9
for
CHLM
ath-e.2
for
CHLM
ath-m.4.bio
for
CHLM
ath-m.4.hor
for
CHLM
ath-m.4.lig
for
CHLM
ath-m.4.str
for
CHLM
ath-m.4.tis
for
CHLM
bra-r.6
for
103862873
bra-r.6
for
103861527
bna-r.1
for
106346558
bna-r.1
for
106442518
bna-r.1
for
106361731
ghi-r.1
for
107953584
ghi-r.1
for
121219290
cit-r.1
for
102629883
gma-u.5
for
100819913
gma-u.5
for
100817017
vvi-u.5
for
100243913
ppo-u.5
for
7454600
mtr-u.5
for
11442990
sly-u.5
for
101267302
sot-r.1
for
102580238
nta-r.1
for
107820682
nta-r.1
for
107822811
osa-u.5
for
4340015
zma-u.5
for
100273426
tae-r.2
for
123166960
tae-r.2
for
123150581
tae-r.2
for
123088190
hvu-r.1
for
123408468
sbi-r.1
for
8069064
bdi-r.1
for
100829664
cre-r.1
for
CHLRE_12g498550v5


Ortholog ID: 8100
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol CHLM LOC103862873 LOC103861527 LOC106346558 LOC106442518 LOC106410008 LOC107953584 LOC121219290 LOC102629883 LOC100819913 LOC100817017 LOC100243913 LOC7454600 LOC11442990 LOC101267302 LOC102580238 LOC107820682 LOC107822811 LOC4340015 LOC100273426 LOC123166960 LOC123150581 LOC123088190 LOC123408468 LOC8069064 LOC100829664 CHLRE_12g498550v5
Function* magnesium-protoporphyrin IX methyltransferase magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic-like magnesium protoporphyrin IX methyltransferase, chloroplastic-like magnesium protoporphyrin IX methyltransferase, chloroplastic uncharacterized LOC100273426 magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic magnesium protoporphyrin IX methyltransferase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
ath00860 Porphyrin metabolism 3
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 5
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 4
bna00260 Glycine, serine and threonine metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna00670 One carbon pool by folate 4
bna00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi00860 Porphyrin metabolism 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi00860 Porphyrin metabolism 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 12
cit00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 8
gma00195 Photosynthesis 4
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 10
gma00860 Porphyrin metabolism 5
gma00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 5
vvi01240 Biosynthesis of cofactors 3
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 5
sot00860 Porphyrin metabolism 3
sot00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
nta03060 Protein export 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae00195 Photosynthesis 3
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
tae00860 Porphyrin metabolism 3
tae00030 Pentose phosphate pathway 2
tae00230 Purine metabolism 2
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi00860 Porphyrin metabolism 6
sbi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 11
cre01240 Biosynthesis of cofactors 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828611 103862873 103861527 106346558 106442518 106410008 107953584 121219290 102629883 100819913 100817017 100243913 7454600 11442990 101267302 102580238 107820682 107822811 4340015 100273426 123166960 123150581 123088190 123408468 8069064 100829664 5727888
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