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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   FSD1   Fe superoxide dismutase 1 
 ath-r.7   FSD1   Fe superoxide dismutase 1 
 ath-m.9   FSD1   Fe superoxide dismutase 1 
 ath-e.2   FSD1   Fe superoxide dismutase 1 
 ath-m.4.bio   FSD1   Fe superoxide dismutase 1 
 ath-m.4.hor   FSD1   Fe superoxide dismutase 1 
 ath-m.4.lig   FSD1   Fe superoxide dismutase 1 
 ath-m.4.str   FSD1   Fe superoxide dismutase 1 
 ath-m.4.tis   FSD1   Fe superoxide dismutase 1 
 ath-u.5   FSD2   Fe superoxide dismutase 2 
 gma-u.5   SODB2   iron-superoxide dismutase 
 gma-u.5   SODB   Fe-superoxide dismutase 
 gma-u.5   100814802   superoxide dismutase [Fe], chloroplastic 
 vvi-u.5   100258067   superoxide dismutase [Fe], chloroplastic 
 ppo-u.5   7456676   superoxide dismutase [Fe], chloroplastic 
 ppo-u.5   18103839   superoxide dismutase [Fe], chloroplastic 
 mtr-u.5   25483199   superoxide dismutase [Fe], chloroplastic 
 sly-u.5   FESOD   iron superoxide dismutase 
 sly-u.5   101248277   superoxide dismutase [Fe], chloroplastic 
 osa-u.5   4339922   superoxide dismutase [Fe] 1, chloroplastic-like 
 zma-u.5   100274012   superoxide dismutase 

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Top 50 coexpressed genes to FSD1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to FSD1 (ath-u.5 coexpression data)

CoexMap"828613"


athFSD1 | Entrez gene ID : 828613      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 10 3 1 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04146 [list] [network] Peroxisome (90 genes)
GO BP
GO:0019430 [list] [network] removal of superoxide radicals  (7 genes)  IC  
GO:0046688 [list] [network] response to copper ion  (27 genes)  IEP  
GO:0010193 [list] [network] response to ozone  (36 genes)  IEP  
GO:0046686 [list] [network] response to cadmium ion  (81 genes)  IEP  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IEP  
GO:0009642 [list] [network] response to light intensity  (168 genes)  IEP  
GO CC
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA RCA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM NAS  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0004784 [list] [network] superoxide dismutase activity  (10 genes)  IDA IEA IMP  
GO:0005507 [list] [network] copper ion binding  (134 genes)  HDA  
Protein NP_001031710.1 [sequence] [blastp]
NP_001190834.1 [sequence] [blastp]
NP_194240.1 [sequence] [blastp]
NP_849440.1 [sequence] [blastp]
NP_849441.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto_nucl 3,  nucl 3,  cyto 3,  nucl_plas 2  (predict for NP_001031710.1)
chlo 4,  cyto 3,  cyto_E.R. 2,  nucl 1,  nucl_plas 1  (predict for NP_001190834.1)
chlo 4,  cyto 3,  cyto_E.R. 2,  nucl 1,  nucl_plas 1  (predict for NP_194240.1)
chlo 4,  cyto 3,  cyto_E.R. 2,  nucl 1,  nucl_plas 1  (predict for NP_849440.1)
chlo 4,  cyto 3,  cyto_E.R. 2,  nucl 1,  nucl_plas 1  (predict for NP_849441.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001031710.1)
other 4,  scret 4  (predict for NP_001190834.1)
other 4,  scret 4  (predict for NP_194240.1)
other 4,  scret 4  (predict for NP_849440.1)
other 4,  scret 4  (predict for NP_849441.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
FSD1

.
ath-r.7
for
FSD1

.
ath-m.9
for
FSD1

.
ath-e.2
for
FSD1

.
ath-m.4.bio
for
FSD1

.
ath-m.4.hor
for
FSD1

.
ath-m.4.lig
for
FSD1

.
ath-m.4.str
for
FSD1

.
ath-m.4.tis
for
FSD1

.
ath-u.5
for
FSD2

.
gma-u.5
for
SODB2

.
gma-u.5
for
SODB

.
gma-u.5
for
100814802

.
vvi-u.5
for
100258067

.
ppo-u.5
for
7456676

.
ppo-u.5
for
18103839

.
mtr-u.5
for
25483199

.
sly-u.5
for
FESOD

.
sly-u.5
for
101248277

.
osa-u.5
for
4339922

.
zma-u.5
for
100274012

.


Ortholog ID: 5809
Species ath gma gma sly sly osa zma bra bra vvi ppo ppo mtr tae ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol FSD2 LOC100813221 SODB2 FESOD LOC101248277 LOC4339922 LOC100274012 LOC103857203 FSD1 LOC100258067 LOC18103839 LOC7456676 LOC25483199 LOC123151939 LOC107953603 LOC107937992 LOC106442544 LOC106346563 CHLRE_10g436050v5 LOC8066912 LOC102588174 LOC102577566 LOC102612585 LOC100838250 LOC107767307 LOC107819573
Function* Fe superoxide dismutase 2 superoxide dismutase [Fe], chloroplastic iron-superoxide dismutase iron superoxide dismutase superoxide dismutase [Fe], chloroplastic superoxide dismutase [Fe] 1, chloroplastic-like superoxide dismutase superoxide dismutase [Fe] 2, chloroplastic fibronectin type III and SPRY domain containing 1 superoxide dismutase [Fe], chloroplastic superoxide dismutase [Fe], chloroplastic superoxide dismutase [Fe], chloroplastic superoxide dismutase [Fe], chloroplastic superoxide dismutase [Fe] 1, chloroplastic superoxide dismutase [Fe], chloroplastic superoxide dismutase [Fe], chloroplastic superoxide dismutase [Fe] 1, chloroplastic superoxide dismutase [Fe] 1, chloroplastic uncharacterized protein superoxide dismutase [Fe] 1, chloroplastic superoxide dismutase [Fe], chloroplastic-like superoxide dismutase [Fe], chloroplastic superoxide dismutase [Fe], chloroplastic-like superoxide dismutase [Fe] 1, chloroplastic superoxide dismutase [Fe], chloroplastic superoxide dismutase [Fe], chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma04141 Protein processing in endoplasmic reticulum 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
cre00900 Terpenoid backbone biosynthesis 2
cre00290 Valine, leucine and isoleucine biosynthesis 2
cre00660 C5-Branched dibasic acid metabolism 2
cre01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 2
sbi01240 Biosynthesis of cofactors 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04146 Peroxisome 2
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04146 Peroxisome 2
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 4
nta00220 Arginine biosynthesis 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00270 Cysteine and methionine metabolism 2
nta00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 4
nta00270 Cysteine and methionine metabolism 3
nta00470 D-Amino acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835183 100813221 547531 544259 101248277 4339922 100274012 103857203 103862899 100258067 18103839 7456676 25483199 123151939 107953603 107937992 106442544 106346563 5716112 8066912 102588174 102577566 102612585 100838250 107767307 107819573
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