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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   EMB2788   ribosome 60S biogenesis amino-terminal protein 
 ath-r.7   EMB2788   ribosome 60S biogenesis amino-terminal protein 
 ath-m.9   EMB2788   ribosome 60S biogenesis amino-terminal protein 
 ath-e.2   EMB2788   ribosome 60S biogenesis amino-terminal protein 
 ath-m.4.bio   EMB2788   ribosome 60S biogenesis amino-terminal protein 
 ath-m.4.hor   EMB2788   ribosome 60S biogenesis amino-terminal protein 
 ath-m.4.lig   EMB2788   ribosome 60S biogenesis amino-terminal protein 
 ath-m.4.str   EMB2788   ribosome 60S biogenesis amino-terminal protein 
 ath-m.4.tis   EMB2788   ribosome 60S biogenesis amino-terminal protein 
 bra-r.6   103866760   uncharacterized LOC103866760 
 bna-r.1   106444870   uncharacterized LOC106444870 
 bna-r.1   106445539   uncharacterized LOC106445539 
 ghi-r.1   107903796   uncharacterized LOC107903796 
 ghi-r.1   107957221   uncharacterized LOC107957221 
 cit-r.1   102613555   uncharacterized LOC102613555 
 gma-u.5   100800766   uncharacterized LOC100800766 
 gma-u.5   100796806   uncharacterized LOC100796806 
 vvi-u.5   100264016   uncharacterized LOC100264016 
 ppo-u.5   18095968   uncharacterized LOC18095968 
 mtr-u.5   25488951   uncharacterized LOC25488951 
 sly-u.5   101258227   uncharacterized LOC101258227 
 sot-r.1   102599460   uncharacterized LOC102599460 
 nta-r.1   107809215   uncharacterized LOC107809215 
 nta-r.1   107824626   uncharacterized LOC107824626 
 osa-u.5   4337062   uncharacterized LOC4337062 
 zma-u.5   103645921   uncharacterized LOC103645921 
 tae-r.2   123043834   uncharacterized LOC123043834 
 tae-r.2   123045990   uncharacterized LOC123045990 
 tae-r.2   123051698   uncharacterized LOC123051698 
 hvu-r.1   123427738   uncharacterized LOC123427738 
 sbi-r.1   8066811   uncharacterized LOC8066811 
 bdi-r.1   100836046   uncharacterized LOC100836046 
 cre-r.1   CHLRE_02g074300v5   uncharacterized protein 

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Top 50 coexpressed genes to EMB2788 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB2788 (ath-u.5 coexpression data)

CoexMap"828809"


athEMB2788 | Entrez gene ID : 828809      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001320074.1 [sequence] [blastp]
NP_194431.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  plas 3,  chlo 1,  cyto 1,  E.R. 1,  golg 1,  cyto_E.R. 1  (predict for NP_001320074.1)
nucl 4,  cyto 3,  plas 2,  cysk_nucl 2  (predict for NP_194431.3)
Subcellular
localization
TargetP
other 8  (predict for NP_001320074.1)
other 9  (predict for NP_194431.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
EMB2788
ath-r.7
for
EMB2788
ath-m.9
for
EMB2788
ath-e.2
for
EMB2788
ath-m.4.bio
for
EMB2788
ath-m.4.hor
for
EMB2788
ath-m.4.lig
for
EMB2788
ath-m.4.str
for
EMB2788
ath-m.4.tis
for
EMB2788
bra-r.6
for
103866760
bna-r.1
for
106444870
bna-r.1
for
106445539
ghi-r.1
for
107903796
ghi-r.1
for
107957221
cit-r.1
for
102613555
gma-u.5
for
100800766
gma-u.5
for
100796806
vvi-u.5
for
100264016
ppo-u.5
for
18095968
mtr-u.5
for
25488951
sly-u.5
for
101258227
sot-r.1
for
102599460
nta-r.1
for
107809215
nta-r.1
for
107824626
osa-u.5
for
4337062
zma-u.5
for
103645921
tae-r.2
for
123043834
tae-r.2
for
123045990
tae-r.2
for
123051698
hvu-r.1
for
123427738
sbi-r.1
for
8066811
bdi-r.1
for
100836046
cre-r.1
for
CHLRE_02g074300v5


Ortholog ID: 7677
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol EMB2788 LOC103866760 LOC106444870 LOC106445539 LOC107903796 LOC107957221 LOC102613555 LOC100800766 LOC100796806 LOC100264016 LOC18095968 LOC25488951 LOC101258227 LOC102599460 LOC107809215 LOC107824626 LOC4337062 LOC103645921 LOC123045990 LOC123054423 LOC123190309 LOC123427738 LOC8066811 LOC100836046 CHLRE_02g074300v5
Function* ribosome 60S biogenesis amino-terminal protein uncharacterized LOC103866760 uncharacterized LOC106444870 uncharacterized LOC106445539 uncharacterized LOC107903796 uncharacterized LOC107957221 uncharacterized LOC102613555 uncharacterized LOC100800766 uncharacterized LOC100796806 uncharacterized LOC100264016 uncharacterized LOC18095968 uncharacterized LOC25488951 uncharacterized LOC101258227 uncharacterized LOC102599460 uncharacterized LOC107809215 uncharacterized LOC107824626 uncharacterized LOC4337062 uncharacterized LOC103645921 uncharacterized LOC123045990 uncharacterized LOC123054423 uncharacterized LOC123190309 uncharacterized LOC123427738 uncharacterized LOC8066811 uncharacterized LOC100836046 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 4
ath03008 Ribosome biogenesis in eukaryotes 4
ath03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 10
ghi03020 RNA polymerase 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 10
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03082 ATP-dependent chromatin remodeling 2
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 5
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
nta04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma03013 Nucleocytoplasmic transport 2
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03020 RNA polymerase 3
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828809 103866760 106444870 106445539 107903796 107957221 102613555 100800766 100796806 100264016 18095968 25488951 101258227 102599460 107809215 107824626 4337062 103645921 123045990 123054423 123190309 123427738 8066811 100836046 5727176
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