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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g074300v5   uncharacterized protein 
 ath-u.5   EMB2788   ribosome 60S biogenesis amino-terminal protein 
 gma-u.5   100800766   uncharacterized LOC100800766 
 gma-u.5   100796806   uncharacterized LOC100796806 
 sly-u.5   101258227   uncharacterized LOC101258227 
 osa-u.5   4337062   uncharacterized LOC4337062 
 zma-u.5   103645921   uncharacterized LOC103645921 
 vvi-u.5   100264016   uncharacterized LOC100264016 
 ppo-u.5   18095968   uncharacterized LOC18095968 
 mtr-u.5   25488951   uncharacterized LOC25488951 

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Top 50 coexpressed genes to CHLRE_02g074300v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g074300v5 (cre-r.1 coexpression data)

CoexMap"5727176"


creCHLRE_02g074300v5 | Entrez gene ID : 5727176    
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (11 genes)  IEA  
GO:0000466 [list] [network] maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (17 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
Protein XP_042926745.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 7,  cyto 2  (predict for XP_042926745.1)
Subcellular
localization
TargetP
other 5  (predict for XP_042926745.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g074300v5

.
ath-u.5
for
EMB2788

.
gma-u.5
for
100800766

.
gma-u.5
for
100796806

.
sly-u.5
for
101258227

.
osa-u.5
for
4337062

.
zma-u.5
for
103645921

.
vvi-u.5
for
100264016

.
ppo-u.5
for
18095968

.
mtr-u.5
for
25488951

.


Ortholog ID: 7677
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol EMB2788 LOC100796806 LOC100800766 LOC101258227 LOC4337062 LOC103645921 LOC103866760 LOC100264016 LOC18095968 LOC25488951 LOC123190309 LOC123054423 LOC123427738 LOC107903796 LOC107957221 LOC106444870 LOC106445539 CHLRE_02g074300v5 LOC8066811 LOC102599460 LOC102613555 LOC100836046 LOC107809215 LOC107824626
Function* ribosome 60S biogenesis amino-terminal protein uncharacterized LOC100796806 uncharacterized LOC100800766 uncharacterized LOC101258227 uncharacterized LOC4337062 uncharacterized LOC103645921 uncharacterized LOC103866760 uncharacterized LOC100264016 uncharacterized LOC18095968 uncharacterized LOC25488951 uncharacterized LOC123190309 uncharacterized LOC123054423 uncharacterized LOC123427738 uncharacterized LOC107903796 uncharacterized LOC107957221 uncharacterized LOC106444870 uncharacterized LOC106445539 uncharacterized protein uncharacterized LOC8066811 uncharacterized LOC102599460 uncharacterized LOC102613555 uncharacterized LOC100836046 uncharacterized LOC107809215 uncharacterized LOC107824626
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 4
ath03008 Ribosome biogenesis in eukaryotes 4
ath03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma03013 Nucleocytoplasmic transport 2
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03020 RNA polymerase 3
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 10
ghi03020 RNA polymerase 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 10
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03082 ATP-dependent chromatin remodeling 2
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 5
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
nta04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828809 100796806 100800766 101258227 4337062 103645921 103866760 100264016 18095968 25488951 123190309 123054423 123427738 107903796 107957221 106444870 106445539 5727176 8066811 102599460 102613555 100836046 107809215 107824626
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