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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-r.7   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-m.9   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-e.2   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-m.4.bio   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-m.4.hor   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-m.4.lig   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-m.4.str   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-m.4.tis   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-u.5   AT4G02400   U3 ribonucleoprotein (Utp) family protein 
 gma-u.5   100811431   U3 small nucleolar RNA-associated protein 14 
 gma-u.5   100784007   uncharacterized protein C57A7.06 
 vvi-u.5   100267476   uncharacterized LOC100267476 
 ppo-u.5   7491296   uncharacterized protein C57A7.06 
 ppo-u.5   7478845   uncharacterized protein C57A7.06 
 mtr-u.5   25490252   U3 small nucleolar RNA-associated protein 14 homolog A 
 mtr-u.5   25499036   U3 small nucleolar RNA-associated protein 14 
 mtr-u.5   112416091   uncharacterized protein C57A7.06 
 sly-u.5   101245392   uncharacterized LOC101245392 
 osa-u.5   4332800   U3 small nucleolar RNA-associated protein 14 
 zma-u.5   103634670   U3 small nucleolar RNA-associated protein 14 

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Top 50 coexpressed genes to AT5G08600 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G08600 (ath-u.5 coexpression data)

CoexMap"830761"


athAT5G08600 | Entrez gene ID : 830761      
Species ath gma vvi ppo mtr sly osa zma nta bna tae bdi sot bra sbi hvu cit cre ghi
Paralog 10 2 1 2 3 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
GO BP
GO:0006364 [list] [network] rRNA processing  (183 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001190265.1 [sequence] [blastp]
NP_001331282.1 [sequence] [blastp]
NP_196477.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 2  (predict for NP_001190265.1)
nucl 5,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for NP_001331282.1)
nucl 7,  cyto 2  (predict for NP_196477.1)
Subcellular
localization
TargetP
chlo 3,  mito 3  (predict for NP_001190265.1)
chlo 3,  mito 3  (predict for NP_001331282.1)
chlo 3,  mito 3  (predict for NP_196477.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G08600

.
ath-r.7
for
AT5G08600

.
ath-m.9
for
AT5G08600

.
ath-e.2
for
AT5G08600

.
ath-m.4.bio
for
AT5G08600

.
ath-m.4.hor
for
AT5G08600

.
ath-m.4.lig
for
AT5G08600

.
ath-m.4.str
for
AT5G08600

.
ath-m.4.tis
for
AT5G08600

.
ath-u.5
for
AT4G02400

.
gma-u.5
for
100811431

.
gma-u.5
for
100784007

.
vvi-u.5
for
100267476

.
ppo-u.5
for
7491296

.
ppo-u.5
for
7478845

.
mtr-u.5
for
25490252

.
mtr-u.5
for
25499036

.
mtr-u.5
for
112416091

.
sly-u.5
for
101245392

.
osa-u.5
for
4332800

.
zma-u.5
for
103634670

.


Ortholog ID: 5347
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre cre sbi sot cit bdi nta nta
Symbol AT5G08600 LOC100784007 LOC100811431 LOC101245392 LOC4332800 LOC103634670 LOC103868214 LOC103836750 LOC100267476 LOC7478845 LOC7491296 LOC25490252 LOC112416091 LOC123156232 LOC123164685 LOC123413484 LOC107943240 LOC107946069 LOC111200819 LOC106381621 CHLRE_11g478950v5 CHLRE_11g478966v5 LOC8083648 LOC102591880 LOC102624815 LOC100843592 LOC107774979 LOC107830027
Function* U3 ribonucleoprotein (Utp) family protein uncharacterized protein C57A7.06 U3 small nucleolar RNA-associated protein 14 uncharacterized LOC101245392 U3 small nucleolar RNA-associated protein 14 U3 small nucleolar RNA-associated protein 14 U3 small nucleolar RNA-associated protein 14 uncharacterized protein C57A7.06 uncharacterized LOC100267476 uncharacterized protein C57A7.06 uncharacterized protein C57A7.06 U3 small nucleolar RNA-associated protein 14 homolog A uncharacterized protein C57A7.06 U3 small nucleolar RNA-associated protein 14 U3 small nucleolar RNA-associated protein 14 uncharacterized protein C57A7.06 U3 small nucleolar RNA-associated protein 14 homolog A U3 small nucleolar RNA-associated protein 14 U3 small nucleolar RNA-associated protein 14 homolog A-like U3 small nucleolar RNA-associated protein 14 uncharacterized protein uncharacterized protein U3 small nucleolar RNA-associated protein 14 uncharacterized protein C57A7.06 uncharacterized LOC102624815 uncharacterized protein C57A7.06 uncharacterized LOC107774979 uncharacterized LOC107830027
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 9
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03082 ATP-dependent chromatin remodeling 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03082 ATP-dependent chromatin remodeling 5
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830761 100784007 100811431 101245392 4332800 103634670 103868214 103836750 100267476 7478845 7491296 25490252 112416091 123156232 123164685 123413484 107943240 107946069 111200819 106381621 5722901 66055332 8083648 102591880 102624815 100843592 107774979 107830027
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