ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	TRFL10	TRF-like 10
ath-r.7	TRFL10	TRF-like 10
ath-m.9	TRFL10	TRF-like 10
ath-e.2	TRFL10	TRF-like 10
ath-m.4.bio	TRFL10	TRF-like 10
ath-m.4.hor	TRFL10	TRF-like 10
ath-m.4.lig	TRFL10	TRF-like 10
ath-m.4.str	TRFL10	TRF-like 10
ath-m.4.tis	TRFL10	TRF-like 10
ath-u.5	AT4G12670	Homeodomain-like superfamily protein
ath-u.5	AT1G14770	RING/FYVE/PHD zinc finger superfamily protein
gma-u.5	100806195	neurofilament medium polypeptide
gma-u.5	100787956	cylicin-2
gma-u.5	102661885	uncharacterized LOC102661885
vvi-u.5	104880931	uncharacterized LOC104880931
vvi-u.5	100852566	uncharacterized LOC100852566
ppo-u.5	7471749	uncharacterized LOC7471749
ppo-u.5	7484006	uncharacterized LOC7484006
mtr-u.5	11421590	uncharacterized LOC11421590
mtr-u.5	11429054	uncharacterized LOC11429054
sly-u.5	101258507	uncharacterized LOC101258507
sly-u.5	101252503	uncharacterized LOC101252503
sly-u.5	104646307	uncharacterized LOC104646307

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(5363 genes)

IPI

Protein

NP_001331807.1 [sequence] [blastp]
NP_001331808.1 [sequence] [blastp]
NP_195998.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, mito 2, chlo 1, cyto 1, cysk 1, golg_plas 1	(predict for NP_001331807.1)
nucl 5, mito 2, plas 1, cyto_mito 1, golg_plas 1	(predict for NP_001331808.1)
nucl 6, mito 2, chlo 1, cyto 1, cysk 1	(predict for NP_195998.2)

Subcellular
localization
TargetP

other 3	(predict for NP_001331807.1)
other 3	(predict for NP_001331808.1)
other 3	(predict for NP_195998.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for TRFL10	ath-r.7 for TRFL10	ath-m.9 for TRFL10	ath-e.2 for TRFL10	ath-m.4.bio for TRFL10	ath-m.4.hor for TRFL10	ath-m.4.lig for TRFL10	ath-m.4.str for TRFL10	ath-m.4.tis for TRFL10	ath-u.5 for AT4G12670	ath-u.5 for AT1G14770	gma-u.5 for 100806195	gma-u.5 for 100787956	gma-u.5 for 102661885	vvi-u.5 for 104880931	vvi-u.5 for 100852566	ppo-u.5 for 7471749	ppo-u.5 for 7484006	mtr-u.5 for 11421590	mtr-u.5 for 11429054	sly-u.5 for 101258507	sly-u.5 for 101252503	sly-u.5 for 104646307

Ortholog

Ortholog ID: 2919

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

Symbol

Function^*

RING/FYVE/PHD zinc finger superfamily protein

uncharacterized LOC103837245

uncharacterized BNAA06G10880D

uncharacterized LOC107910957

uncharacterized LOC107933998

uncharacterized LOC102612342

uncharacterized LOC102624735

neurofilament medium polypeptide

cylicin-2

uncharacterized LOC104880931

uncharacterized LOC100852566

uncharacterized LOC7484006

uncharacterized LOC11421590

uncharacterized LOC11429054

uncharacterized LOC101258507

uncharacterized LOC101252503

uncharacterized LOC102593143

uncharacterized LOC102589560

uncharacterized LOC107766321

uncharacterized LOC107774792

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03440	Homologous recombination	2
ath03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	4
ghi03040	Spliceosome	3
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	6
mtr00510	N-Glycan biosynthesis	3
mtr00513	Various types of N-glycan biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	2
mtr01210	2-Oxocarboxylic acid metabolism	2
mtr01230	Biosynthesis of amino acids	2
mtr04142	Lysosome	2
mtr00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00909	Sesquiterpenoid and triterpenoid biosynthesis	4
sot00999	Biosynthesis of various plant secondary metabolites	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	4
nta03040	Spliceosome	3
nta03030	DNA replication	2
nta03410	Base excision repair	2
nta03420	Nucleotide excision repair	2

Expression

Expression pattern

Entrez Gene ID^*

838042

103837245

106349863

107910957

107933998

102612342

102624735

100806195

100787956

104880931

100852566

7484006

11421590

11429054

101258507

101252503

102593143

102589560

107766321

107774792

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to TRFL10 (ath-u.5 coexpression data)

Top 50 enrichment test to TRFL10 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	bdi	hvu	bra	cit	bna	sbi	ghi	osa	sot	nta	cre	tae	zma
Paralog	11	3	2	2	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to TRFL10 (ath-u.5 coexpression data)

Top 50 enrichment test to TRFL10 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**