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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G24450   Transcription factor IIIC, subunit 5 
 ath-r.7   AT5G24450   Transcription factor IIIC, subunit 5 
 ath-m.9   AT5G24450   Transcription factor IIIC, subunit 5 
 ath-e.2   AT5G24450   Transcription factor IIIC, subunit 5 
 ath-m.4.bio   AT5G24450   Transcription factor IIIC, subunit 5 
 ath-m.4.hor   AT5G24450   Transcription factor IIIC, subunit 5 
 ath-m.4.lig   AT5G24450   Transcription factor IIIC, subunit 5 
 ath-m.4.str   AT5G24450   Transcription factor IIIC, subunit 5 
 ath-m.4.tis   AT5G24450   Transcription factor IIIC, subunit 5 
 ath-u.5   AT3G49410   Transcription factor IIIC, subunit 5 
 gma-u.5   100819979   general transcription factor 3C polypeptide 5 
 vvi-u.5   100247425   uncharacterized LOC100247425 
 ppo-u.5   7465611   uncharacterized LOC7465611 
 mtr-u.5   11409861   general transcription factor 3C polypeptide 5 
 sly-u.5   101264493   uncharacterized LOC101264493 
 osa-u.5   4323940   uncharacterized LOC4323940 
 zma-u.5   100192729   uncharacterized LOC100192729 

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Top 50 coexpressed genes to AT5G24450 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G24450 (ath-u.5 coexpression data)

CoexMap"832516"


athAT5G24450 | Entrez gene ID : 832516      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 10 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006384 [list] [network] transcription initiation at RNA polymerase III promoter  (8 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001330523.1 [sequence] [blastp]
NP_197833.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001330523.1)
nucl 9  (predict for NP_197833.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001330523.1)
other 8  (predict for NP_197833.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G24450

.
ath-r.7
for
AT5G24450

.
ath-m.9
for
AT5G24450

.
ath-e.2
for
AT5G24450

.
ath-m.4.bio
for
AT5G24450

.
ath-m.4.hor
for
AT5G24450

.
ath-m.4.lig
for
AT5G24450

.
ath-m.4.str
for
AT5G24450

.
ath-m.4.tis
for
AT5G24450

.
ath-u.5
for
AT3G49410

.
gma-u.5
for
100819979

.
vvi-u.5
for
100247425

.
ppo-u.5
for
7465611

.
mtr-u.5
for
11409861

.
sly-u.5
for
101264493

.
osa-u.5
for
4323940

.
zma-u.5
for
100192729

.


Ortholog ID: 6016
Species ath ath gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna cre sbi sot cit bdi nta nta
Symbol AT5G24450 AT3G49410 LOC100819979 LOC101264493 LOC4323940 LOC100192729 LOC103854858 LOC103875342 LOC100247425 LOC7465611 LOC11409861 LOC123144203 LOC123182947 LOC123449368 LOC107913018 LOC107946819 LOC106382605 CHLRE_13g576250v5 LOC8063766 LOC102591133 LOC102610199 LOC100838866 LOC107812107 LOC107800139
Function* Transcription factor IIIC, subunit 5 Transcription factor IIIC, subunit 5 general transcription factor 3C polypeptide 5 uncharacterized LOC101264493 uncharacterized LOC4323940 uncharacterized LOC100192729 general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5 uncharacterized LOC100247425 uncharacterized LOC7465611 general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5-like general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5-like uncharacterized protein general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5-like uncharacterized LOC102610199 general transcription factor 3C polypeptide 5 uncharacterized LOC107812107 uncharacterized LOC107800139
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03022 Basal transcription factors 2
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 2
vvi03460 Fanconi anemia pathway 2
vvi04814 Motor proteins 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00600 Sphingolipid metabolism 2
mtr04382 Cornified envelope formation 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
cit03022 Basal transcription factors 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832516 824103 100819979 101264493 4323940 100192729 103854858 103875342 100247425 7465611 11409861 123144203 123182947 123449368 107913018 107946819 106382605 5719238 8063766 102591133 102610199 100838866 107812107 107800139
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