ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT5G25757	RNA polymerase I-associated factor PAF67
ath-r.7	AT5G25757	RNA polymerase I-associated factor PAF67
ath-e.2	AT5G25757	RNA polymerase I-associated factor PAF67
ath-u.5	AT5G25754	RNA polymerase I-associated factor PAF67
bna-r.1	106348766	eukaryotic translation initiation factor 3 subunit L-like
bna-r.1	106348547	eukaryotic translation initiation factor 3 subunit L-like
ghi-r.1	121229244	eukaryotic translation initiation factor 3 subunit L
ghi-r.1	107906949	eukaryotic translation initiation factor 3 subunit L
ghi-r.1	107901567	eukaryotic translation initiation factor 3 subunit L
cit-r.1	102620355	uncharacterized LOC102620355
gma-u.5	100804691	eukaryotic translation initiation factor 3 subunit L
gma-u.5	100786533	eukaryotic translation initiation factor 3 subunit L
vvi-u.5	100261248	uncharacterized LOC100261248
ppo-u.5	7471539	uncharacterized LOC7471539
ppo-u.5	7458974	uncharacterized LOC7458974
mtr-u.5	25490098	eukaryotic translation initiation factor 3 subunit L
sly-u.5	101260365	uncharacterized LOC101260365
sot-r.1	102589649	eukaryotic translation initiation factor 3 subunit L-like
nta-r.1	107773770	uncharacterized LOC107773770
nta-r.1	107766223	uncharacterized LOC107766223
osa-u.5	4327193	uncharacterized LOC4327193
osa-u.5	4338152	uncharacterized LOC4338152
zma-u.5	100279318	eukaryotic translation initiation factor 3 subunit 6-interacting protein
zma-u.5	103649546	eukaryotic translation initiation factor 3 subunit L-like
tae-r.2	123069353	eukaryotic translation initiation factor 3 subunit L
tae-r.2	123060790	eukaryotic translation initiation factor 3 subunit L
tae-r.2	123077868	eukaryotic translation initiation factor 3 subunit L
hvu-r.1	123443248	eukaryotic translation initiation factor 3 subunit L-like
sbi-r.1	8080370	eukaryotic translation initiation factor 3 subunit L
bdi-r.1	100821595	eukaryotic translation initiation factor 3 subunit L
cre-r.1	CHLRE_17g697450v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005829 [list] [network] cytosol	(2593 genes)	RCA
GO:0009536 [list] [network] plastid	(5443 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

Protein

NP_680223.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 4, chlo 1, extr 1, vacu 1

(predict for NP_680223.1)

Subcellular
localization
TargetP

other 9

(predict for NP_680223.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT5G25757	ath-r.7 for AT5G25757	ath-e.2 for AT5G25757	ath-u.5 for AT5G25754	bna-r.1 for 106348766	bna-r.1 for 106348547	ghi-r.1 for 121229244	ghi-r.1 for 107906949	ghi-r.1 for 107901567	cit-r.1 for 102620355	gma-u.5 for 100804691	gma-u.5 for 100786533	vvi-u.5 for 100261248	ppo-u.5 for 7471539	ppo-u.5 for 7458974	mtr-u.5 for 25490098	sly-u.5 for 101260365	sot-r.1 for 102589649	nta-r.1 for 107773770	nta-r.1 for 107766223	osa-u.5 for 4327193	osa-u.5 for 4338152	zma-u.5 for 100279318	zma-u.5 for 103649546	tae-r.2 for 123069353	tae-r.2 for 123060790	tae-r.2 for 123077868	hvu-r.1 for 123443248	sbi-r.1 for 8080370	bdi-r.1 for 100821595	cre-r.1 for CHLRE_17g697450v5

Ortholog

Ortholog ID: 7354

Species

ath

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

RNA polymerase I-associated factor PAF67

eukaryotic translation initiation factor 3 subunit L-like

eukaryotic translation initiation factor 3 subunit L

uncharacterized LOC102620355

eukaryotic translation initiation factor 3 subunit L

uncharacterized LOC100261248

uncharacterized LOC7471539

uncharacterized LOC7458974

eukaryotic translation initiation factor 3 subunit L

uncharacterized LOC101260365

eukaryotic translation initiation factor 3 subunit L-like

uncharacterized LOC107773770

uncharacterized LOC107766223

uncharacterized LOC4327193

uncharacterized LOC4338152

eukaryotic translation initiation factor 3 subunit 6-interacting protein

eukaryotic translation initiation factor 3 subunit L-like

eukaryotic translation initiation factor 3 subunit L

eukaryotic translation initiation factor 3 subunit L-like

eukaryotic translation initiation factor 3 subunit L

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00970	Aminoacyl-tRNA biosynthesis	3
bna00220	Arginine biosynthesis	2
bna00240	Pyrimidine metabolism	2
bna00250	Alanine, aspartate and glutamate metabolism	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00970	Aminoacyl-tRNA biosynthesis	3
bna00220	Arginine biosynthesis	2
bna00240	Pyrimidine metabolism	2
bna00250	Alanine, aspartate and glutamate metabolism	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	2
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	2
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	2
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00510	N-Glycan biosynthesis	3
cit04141	Protein processing in endoplasmic reticulum	3
cit03010	Ribosome	3
cit00290	Valine, leucine and isoleucine biosynthesis	2
cit00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2
vvi00020	Citrate cycle (TCA cycle)	2
vvi00785	Lipoic acid metabolism	2
vvi01200	Carbon metabolism	2
vvi01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	8
ppo00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	11
mtr00970	Aminoacyl-tRNA biosynthesis	2
mtr00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	5
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	15
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	3
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00220	Arginine biosynthesis	2
tae00240	Pyrimidine metabolism	2
tae00250	Alanine, aspartate and glutamate metabolism	2
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	3
hvu00970	Aminoacyl-tRNA biosynthesis	2
hvu03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	15

Expression

Expression pattern

Entrez Gene ID^*

832644

832643

106348766

106348547

107906949

107901567

107896412

102620355

100804691

100786533

100261248

7471539

7458974

25490098

101260365

102589649

107773770

107766223

4327193

4338152

100279318

103649546

123069353

123060790

123077868

123443248

8080370

100821595

5717366

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT5G25757 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G25757 (ath-u.5 coexpression data)


Species	ath	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	bra
Paralog	4	2	3	1	2	1	2	1	1	1	2	2	2	3	1	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G25757 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G25757 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**