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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-r.7   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-m.9   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-e.2   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-m.4.bio   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-m.4.hor   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-m.4.lig   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-m.4.str   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-m.4.tis   AT5G38720   ribosomal RNA-processing 7 protein 
 gma-u.5   100802650   ribosomal RNA-processing protein 7 homolog A 
 gma-u.5   100776399   ribosomal RNA-processing protein 7 homolog A 
 vvi-u.5   100265155   uncharacterized LOC100265155 
 ppo-u.5   18107432   uncharacterized LOC18107432 
 ppo-u.5   7468378   uncharacterized LOC7468378 
 mtr-u.5   11426579   DNA ligase 1 
 mtr-u.5   11411264   ribosomal RNA-processing protein 7 
 mtr-u.5   11422352   ribosomal RNA-processing protein 7 homolog A 
 sly-u.5   101268734   uncharacterized LOC101268734 
 sly-u.5   101259128   uncharacterized LOC101259128 
 osa-u.5   4330604   uncharacterized LOC4330604 
 zma-u.5   100193550   rRNA processing 7-like 

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Top 50 coexpressed genes to AT5G38720 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G38720 (ath-u.5 coexpression data)

CoexMap"833863"


athAT5G38720 | Entrez gene ID : 833863      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 2 1 2 3 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
GO BP
GO:0000028 [list] [network] ribosomal small subunit assembly  (2 genes)  IMP  
GO:0006364 [list] [network] rRNA processing  (183 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (394 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_001332268.1 [sequence] [blastp]
NP_001332269.1 [sequence] [blastp]
NP_198688.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  plas 1,  E.R._plas 1  (predict for NP_001332268.1)
nucl 8,  plas 1  (predict for NP_001332269.1)
nucl 9  (predict for NP_198688.2)
Subcellular
localization
TargetP
scret 9  (predict for NP_001332268.1)
other 8  (predict for NP_001332269.1)
other 8  (predict for NP_198688.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G38720

.
ath-r.7
for
AT5G38720

.
ath-m.9
for
AT5G38720

.
ath-e.2
for
AT5G38720

.
ath-m.4.bio
for
AT5G38720

.
ath-m.4.hor
for
AT5G38720

.
ath-m.4.lig
for
AT5G38720

.
ath-m.4.str
for
AT5G38720

.
ath-m.4.tis
for
AT5G38720

.
gma-u.5
for
100802650

.
gma-u.5
for
100776399

.
vvi-u.5
for
100265155

.
ppo-u.5
for
18107432

.
ppo-u.5
for
7468378

.
mtr-u.5
for
11426579

.
mtr-u.5
for
11411264

.
mtr-u.5
for
11422352

.
sly-u.5
for
101268734

.
sly-u.5
for
101259128

.
osa-u.5
for
4330604

.
zma-u.5
for
100193550

.


Ortholog ID: 6985
Species ath gma gma sly sly osa zma bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol AT5G38720 LOC100802650 LOC100776399 LOC101259128 LOC101268734 LOC4330604 LOC100193550 LOC103863799 LOC100265155 LOC18107432 LOC7468378 LOC11426579 LOC11411264 LOC123138117 LOC123145365 LOC123403424 LOC107895090 LOC107920256 LOC106407483 LOC106445936 CHLRE_01g052200v5 LOC8071739 LOC102585700 LOC102589922 LOC102608731 LOC100824086 LOC107790215 LOC107765719
Function* ribosomal RNA-processing 7 protein ribosomal RNA-processing protein 7 homolog A ribosomal RNA-processing protein 7 homolog A uncharacterized LOC101259128 uncharacterized LOC101268734 uncharacterized LOC4330604 rRNA processing 7-like calponin homology domain-containing protein DDB_G0272472 uncharacterized LOC100265155 uncharacterized LOC18107432 uncharacterized LOC7468378 DNA ligase 1 ribosomal RNA-processing protein 7 uncharacterized LOC123138117 uncharacterized LOC123145365 uncharacterized LOC123403424 ribosomal RNA-processing protein 7 homolog A ribosomal RNA-processing protein 7 homolog A calponin homology domain-containing protein DDB_G0272472-like calponin homology domain-containing protein DDB_G0272472 uncharacterized protein ribosomal RNA-processing protein 7 uncharacterized protein DDB_G0283697-like uncharacterized protein PF11_0207-like uncharacterized LOC102608731 DNA ligase 1 uncharacterized LOC107790215 uncharacterized LOC107765719
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
ghi04120 Ubiquitin mediated proteolysis 6
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
ghi04120 Ubiquitin mediated proteolysis 6
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 833863 100802650 100776399 101259128 101268734 4330604 100193550 103863799 100265155 18107432 7468378 11426579 11411264 123138117 123145365 123403424 107895090 107920256 106407483 106445936 66052171 8071739 102585700 102589922 102608731 100824086 107790215 107765719
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