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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   EMB3012   embryo defective 3012 
 ath-r.7   EMB3012   embryo defective 3012 
 ath-m.9   EMB3012   embryo defective 3012 
 ath-e.2   EMB3012   embryo defective 3012 
 ath-m.4.bio   EMB3012   embryo defective 3012 
 ath-m.4.hor   EMB3012   embryo defective 3012 
 ath-m.4.lig   EMB3012   embryo defective 3012 
 ath-m.4.str   EMB3012   embryo defective 3012 
 ath-m.4.tis   EMB3012   embryo defective 3012 
 bra-r.6   103850178   nuclear pore complex protein GP210 
 bna-r.1   106352690   nuclear pore complex protein GP210-like 
 bna-r.1   106405701   nuclear pore complex protein GP210 
 ghi-r.1   107892253   nuclear pore complex protein GP210 
 ghi-r.1   107892125   nuclear pore complex protein GP210 
 cit-r.1   102617045   nuclear pore complex protein GP210 
 gma-u.5   100778001   nuclear pore complex protein GP210 
 vvi-u.5   100257580   nuclear pore complex protein GP210 
 ppo-u.5   18095321   nuclear pore complex protein GP210 
 mtr-u.5   25495140   nuclear pore complex protein GP210 
 sly-u.5   101260108   nuclear pore complex protein GP210 
 sot-r.1   102591106   nuclear pore complex protein GP210 
 nta-r.1   107814409   nuclear pore complex protein GP210-like 
 nta-r.1   107797811   nuclear pore complex protein GP210 
 osa-u.5   4347873   nuclear pore complex protein GP210 
 zma-u.5   100384390   uncharacterized LOC100384390 
 tae-r.2   123122681   nuclear pore complex protein GP210 
 tae-r.2   123113161   nuclear pore complex protein GP210 
 tae-r.2   123104875   nuclear pore complex protein GP210 
 hvu-r.1   123452067   nuclear pore complex protein GP210 
 sbi-r.1   8061681   nuclear pore complex protein GP210 
 bdi-r.1   100821041   nuclear pore complex protein GP210 

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Top 50 coexpressed genes to EMB3012 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB3012 (ath-u.5 coexpression data)

CoexMap"834046"


athEMB3012 | Entrez gene ID : 834046      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03013 [list] [network] Nucleocytoplasmic transport (105 genes)
GO BP
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  NAS  
GO CC
GO:0005635 [list] [network] nuclear envelope  (107 genes)  IDA  
GO:0005783 [list] [network] endoplasmic reticulum  (897 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_198864.2 [sequence] [blastp]
Subcellular
localization
wolf
plas 10  (predict for NP_198864.2)
Subcellular
localization
TargetP
scret 9  (predict for NP_198864.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
EMB3012
ath-r.7
for
EMB3012
ath-m.9
for
EMB3012
ath-e.2
for
EMB3012
ath-m.4.bio
for
EMB3012
ath-m.4.hor
for
EMB3012
ath-m.4.lig
for
EMB3012
ath-m.4.str
for
EMB3012
ath-m.4.tis
for
EMB3012
bra-r.6
for
103850178
bna-r.1
for
106352690
bna-r.1
for
106405701
ghi-r.1
for
107892253
ghi-r.1
for
107892125
cit-r.1
for
102617045
gma-u.5
for
100778001
vvi-u.5
for
100257580
ppo-u.5
for
18095321
mtr-u.5
for
25495140
sly-u.5
for
101260108
sot-r.1
for
102591106
nta-r.1
for
107814409
nta-r.1
for
107797811
osa-u.5
for
4347873
zma-u.5
for
100384390
tae-r.2
for
123122681
tae-r.2
for
123113161
tae-r.2
for
123104875
hvu-r.1
for
123452067
sbi-r.1
for
8061681
bdi-r.1
for
100821041


Ortholog ID: 11429
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol EMB3012 LOC103850178 LOC106352690 LOC106405701 LOC107892253 LOC107892125 LOC102617045 LOC100778001 LOC100257580 LOC18095321 LOC25495140 LOC101260108 LOC102591106 LOC107814409 LOC107797811 LOC4347873 LOC100384390 LOC123122681 LOC123113161 LOC123104875 LOC123452067 LOC8061681 LOC100821041
Function* embryo defective 3012 nuclear pore complex protein GP210 nuclear pore complex protein GP210-like nuclear pore complex protein GP210 nuclear pore complex protein GP210 nuclear pore complex protein GP210 nuclear pore complex protein GP210 nuclear pore complex protein GP210 nuclear pore complex protein GP210 nuclear pore complex protein GP210 nuclear pore complex protein GP210 nuclear pore complex protein GP210 nuclear pore complex protein GP210 nuclear pore complex protein GP210-like nuclear pore complex protein GP210 nuclear pore complex protein GP210 uncharacterized LOC100384390 nuclear pore complex protein GP210 nuclear pore complex protein GP210 nuclear pore complex protein GP210 nuclear pore complex protein GP210 nuclear pore complex protein GP210 nuclear pore complex protein GP210
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 5
ath03008 Ribosome biogenesis in eukaryotes 2
ath03020 RNA polymerase 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03013 Nucleocytoplasmic transport 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03440 Homologous recombination 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03440 Homologous recombination 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 4
vvi03015 mRNA surveillance pathway 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 4
sly03008 Ribosome biogenesis in eukaryotes 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03008 Ribosome biogenesis in eukaryotes 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03008 Ribosome biogenesis in eukaryotes 4
tae03013 Nucleocytoplasmic transport 3
tae03030 DNA replication 2
tae03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03013 Nucleocytoplasmic transport 5
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03013 Nucleocytoplasmic transport 4
tae03018 RNA degradation 3
tae00780 Biotin metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 5
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834046 103850178 106352690 106405701 107892253 107892125 102617045 100778001 100257580 18095321 25495140 101260108 102591106 107814409 107797811 4347873 100384390 123122681 123113161 123104875 123452067 8061681 100821041
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