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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   ATIM   timeless family protein 
 ath-r.7   ATIM   timeless family protein 
 ath-m.9   ATIM   timeless family protein 
 ath-e.2   ATIM   timeless family protein 
 ath-m.4.bio   ATIM   timeless family protein 
 ath-m.4.hor   ATIM   timeless family protein 
 ath-m.4.lig   ATIM   timeless family protein 
 ath-m.4.str   ATIM   timeless family protein 
 ath-m.4.tis   ATIM   timeless family protein 
 bra-r.6   103844773   protein timeless homolog 
 bna-r.1   106412787   protein timeless homolog 
 bna-r.1   106430533   protein timeless homolog 
 ghi-r.1   107947329   protein timeless homolog 
 ghi-r.1   121224374   protein timeless homolog 
 cit-r.1   102618757   uncharacterized LOC102618757 
 gma-u.5   100796385   uncharacterized LOC100796385 
 gma-u.5   100785399   uncharacterized LOC100785399 
 vvi-u.5   100246656   uncharacterized LOC100246656 
 ppo-u.5   18105661   uncharacterized LOC18105661 
 mtr-u.5   11424152   protein timeless homolog 
 sly-u.5   101258729   uncharacterized LOC101258729 
 sot-r.1   102579745   protein timeless homolog 
 nta-r.1   107820701   uncharacterized LOC107820701 
 nta-r.1   107771366   uncharacterized LOC107771366 
 osa-u.5   4338095   uncharacterized LOC4338095 
 zma-u.5   100273829   uncharacterized LOC100273829 
 tae-r.2   123147131   protein timeless homolog 
 tae-r.2   123068991   protein timeless homolog 
 tae-r.2   123183192   protein timeless homolog 
 hvu-r.1   123450975   protein timeless homolog 
 sbi-r.1   8064694   protein timeless homolog 
 bdi-r.1   100823556   protein timeless homolog 
 cre-r.1   CHLRE_06g284850v5   uncharacterized protein 

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Top 50 coexpressed genes to ATIM (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ATIM (ath-u.5 coexpression data)

CoexMap"835368"


athATIM | Entrez gene ID : 835368      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042752 [list] [network] regulation of circadian rhythm  (59 genes)  NAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM NAS  
GO MF
Protein NP_001330129.1 [sequence] [blastp]
NP_200103.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  nucl 3  (predict for NP_001330129.1)
plas 6,  nucl 3,  golg_plas 3,  cysk_plas 3,  E.R._plas 3,  cyto_plas 3  (predict for NP_200103.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001330129.1)
other 9  (predict for NP_200103.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
ATIM
ath-r.7
for
ATIM
ath-m.9
for
ATIM
ath-e.2
for
ATIM
ath-m.4.bio
for
ATIM
ath-m.4.hor
for
ATIM
ath-m.4.lig
for
ATIM
ath-m.4.str
for
ATIM
ath-m.4.tis
for
ATIM
bra-r.6
for
103844773
bna-r.1
for
106412787
bna-r.1
for
106430533
ghi-r.1
for
107947329
ghi-r.1
for
121224374
cit-r.1
for
102618757
gma-u.5
for
100796385
gma-u.5
for
100785399
vvi-u.5
for
100246656
ppo-u.5
for
18105661
mtr-u.5
for
11424152
sly-u.5
for
101258729
sot-r.1
for
102579745
nta-r.1
for
107820701
nta-r.1
for
107771366
osa-u.5
for
4338095
zma-u.5
for
100273829
tae-r.2
for
123147131
tae-r.2
for
123068991
tae-r.2
for
123183192
hvu-r.1
for
123450975
sbi-r.1
for
8064694
bdi-r.1
for
100823556
cre-r.1
for
CHLRE_06g284850v5


Ortholog ID: 9734
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol ATIM LOC103844773 LOC106412787 LOC106430533 LOC107947329 LOC121224374 LOC102618757 LOC100796385 LOC100785399 LOC100246656 LOC18105661 LOC11424152 LOC101258729 LOC102579745 LOC107820701 LOC107771366 LOC4338095 LOC100273829 LOC123147131 LOC123068991 LOC123183192 LOC123450975 LOC8064694 LOC100823556 CHLRE_06g284850v5
Function* timeless family protein protein timeless homolog protein timeless homolog protein timeless homolog protein timeless homolog protein timeless homolog uncharacterized LOC102618757 uncharacterized LOC100796385 uncharacterized LOC100785399 uncharacterized LOC100246656 uncharacterized LOC18105661 protein timeless homolog uncharacterized LOC101258729 protein timeless homolog uncharacterized LOC107820701 uncharacterized LOC107771366 uncharacterized LOC4338095 uncharacterized LOC100273829 protein timeless homolog protein timeless homolog protein timeless homolog protein timeless homolog protein timeless homolog protein timeless homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 10
bra00240 Pyrimidine metabolism 2
bra01232 Nucleotide metabolism 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 14
bna03430 Mismatch repair 3
bna03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 3
ghi03460 Fanconi anemia pathway 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 6
ghi03460 Fanconi anemia pathway 4
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 8
cit04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 12
gma03430 Mismatch repair 2
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 9
ppo03440 Homologous recombination 3
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 8
mtr03440 Homologous recombination 3
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 11
sly03430 Mismatch repair 3
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 3
sot03440 Homologous recombination 2
sot03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 4
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 15
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 15
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 15
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 8
bdi03440 Homologous recombination 4
bdi03460 Fanconi anemia pathway 3
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835368 103844773 106412787 106430533 107947329 121224374 102618757 100796385 100785399 100246656 18105661 11424152 101258729 102579745 107820701 107771366 4338095 100273829 123147131 123068991 123183192 123450975 8064694 100823556 66053782
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