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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   HDS   4-hydroxy-3-methylbut-2-enyl diphosphate synthase 
 ath-r.7   HDS   4-hydroxy-3-methylbut-2-enyl diphosphate synthase 
 ath-m.9   HDS   4-hydroxy-3-methylbut-2-enyl diphosphate synthase 
 ath-e.2   HDS   4-hydroxy-3-methylbut-2-enyl diphosphate synthase 
 ath-m.4.bio   HDS   4-hydroxy-3-methylbut-2-enyl diphosphate synthase 
 ath-m.4.hor   HDS   4-hydroxy-3-methylbut-2-enyl diphosphate synthase 
 ath-m.4.lig   HDS   4-hydroxy-3-methylbut-2-enyl diphosphate synthase 
 ath-m.4.str   HDS   4-hydroxy-3-methylbut-2-enyl diphosphate synthase 
 ath-m.4.tis   HDS   4-hydroxy-3-methylbut-2-enyl diphosphate synthase 
 gma-u.5   100819481   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 gma-u.5   100801743   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 vvi-u.5   100257071   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 ppo-u.5   18098191   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 ppo-u.5   7489339   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 mtr-u.5   11413255   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 sly-u.5   HDS   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
 osa-u.5   4329911   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like 
 zma-u.5   542690   uncharacterized LOC542690 

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Top 50 coexpressed genes to HDS (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HDS (ath-u.5 coexpression data)

CoexMap"836181"


athHDS | Entrez gene ID : 836181      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00900 [list] [network] Terpenoid backbone biosynthesis (61 genes)
GO BP
GO:0019288 [list] [network] isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway  (6 genes)  TAS  
GO:0009862 [list] [network] systemic acquired resistance, salicylic acid mediated signaling pathway  (16 genes)  IMP  
GO:0016114 [list] [network] terpenoid biosynthetic process  (109 genes)  IEA  
GO:0009617 [list] [network] response to bacterium  (500 genes)  IMP  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0046429 [list] [network] 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity (ferredoxin)  (2 genes)  IDA IGI  
GO:0051539 [list] [network] 4 iron, 4 sulfur cluster binding  (4 genes)  IDA  
Protein NP_001119467.1 [sequence] [blastp]
NP_001332136.1 [sequence] [blastp]
NP_001332137.1 [sequence] [blastp]
NP_200868.2 [sequence] [blastp]
NP_851233.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  cyto 1  (predict for NP_001119467.1)
chlo 8,  cyto 1  (predict for NP_001332136.1)
chlo 8,  cyto 1  (predict for NP_001332137.1)
chlo 7,  cyto 2  (predict for NP_200868.2)
chlo 6,  cyto 2,  mito 1,  cysk 1  (predict for NP_851233.1)
Subcellular
localization
TargetP
chlo 8,  other 4  (predict for NP_001119467.1)
chlo 8,  other 4  (predict for NP_001332136.1)
chlo 8,  other 4  (predict for NP_001332137.1)
chlo 8,  other 4  (predict for NP_200868.2)
chlo 8,  other 4  (predict for NP_851233.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
HDS

.
ath-r.7
for
HDS

.
ath-m.9
for
HDS

.
ath-e.2
for
HDS

.
ath-m.4.bio
for
HDS

.
ath-m.4.hor
for
HDS

.
ath-m.4.lig
for
HDS

.
ath-m.4.str
for
HDS

.
ath-m.4.tis
for
HDS

.
gma-u.5
for
100819481

.
gma-u.5
for
100801743

.
vvi-u.5
for
100257071

.
ppo-u.5
for
18098191

.
ppo-u.5
for
7489339

.
mtr-u.5
for
11413255

.
sly-u.5
for
HDS

.
osa-u.5
for
4329911

.
zma-u.5
for
542690

.


Ortholog ID: 8207
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol HDS LOC100819481 LOC100801743 HDS LOC4329911 LOC542690 LOC103845475 LOC100257071 LOC18098191 LOC7489339 LOC11413255 LOC123144749 LOC123127643 LOC123401503 LOC121219946 LOC107962783 LOC106371612 LOC106365752 CHLRE_12g490350v5 LOC8072432 LOC102591285 LOC102630187 LOC100838320 LOC107760467 LOC107788162
Function* 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like uncharacterized LOC542690 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic uncharacterized protein 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 9
gma00920 Sulfur metabolism 2
gma01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 9
gma00270 Cysteine and methionine metabolism 4
gma00460 Cyanoamino acid metabolism 2
gma00920 Sulfur metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 4
sly00906 Carotenoid biosynthesis 2
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00051 Fructose and mannose metabolism 3
bra00260 Glycine, serine and threonine metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 5
ppo00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 6
mtr00906 Carotenoid biosynthesis 4
mtr00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
ghi00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
ghi00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
bna00061 Fatty acid biosynthesis 2
bna00071 Fatty acid degradation 2
bna01212 Fatty acid metabolism 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 9
cre01240 Biosynthesis of cofactors 5
cre00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sbi01240 Biosynthesis of cofactors 2
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00900 Terpenoid backbone biosynthesis 6
cit00480 Glutathione metabolism 3
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 8
nta00071 Fatty acid degradation 3
nta01212 Fatty acid metabolism 3
nta00061 Fatty acid biosynthesis 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 8
nta00071 Fatty acid degradation 3
nta01212 Fatty acid metabolism 3
nta00061 Fatty acid biosynthesis 2
nta04146 Peroxisome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836181 100819481 100801743 543704 4329911 542690 103845475 100257071 18098191 7489339 11413255 123144749 123127643 123401503 121219946 107962783 106371612 106365752 5716700 8072432 102591285 102630187 100838320 107760467 107788162
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