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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102630187   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 ath-u.5   HDS   4-hydroxy-3-methylbut-2-enyl diphosphate synthase 
 bra-r.6   103845475   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 ghi-r.1   107959038   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like 
 ghi-r.1   121219946   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 ghi-r.1   107962783   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 bna-r.1   106362570   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like 
 bna-r.1   106365752   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 bna-r.1   106371612   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 gma-u.5   100819481   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 gma-u.5   100801743   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 vvi-u.5   100257071   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 ppo-u.5   18098191   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 ppo-u.5   7489339   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 mtr-u.5   11413255   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 sly-u.5   HDS   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
 sot-r.1   102591285   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 nta-r.1   107788162   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like 
 nta-r.1   107796388   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 nta-r.1   107760467   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like 
 osa-u.5   4329911   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like 
 zma-u.5   542690   uncharacterized LOC542690 
 tae-r.2   123144749   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 tae-r.2   123137401   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 tae-r.2   123127643   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 hvu-r.1   123401503   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 sbi-r.1   8072432   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 bdi-r.1   100838320   4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 
 cre-r.1   CHLRE_12g490350v5   uncharacterized protein 

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Top 50 coexpressed genes to 102630187 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102630187 (cit-r.1 coexpression data)

CoexMap"102630187"


citLOC102630187 | Entrez gene ID : 102630187    
Species cit ath bra ghi bna gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 1 1 3 3 2 1 2 1 1 1 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit00900 [list] [network] Terpenoid backbone biosynthesis (56 genes)
GO BP
GO:0019288 [list] [network] isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway  (4 genes)  IEA  
GO:0016114 [list] [network] terpenoid biosynthetic process  (98 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (523 genes)  IEA  
GO MF
GO:0046429 [list] [network] 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity (ferredoxin)  (1 genes)  IEA  
GO:0005506 [list] [network] iron ion binding  (362 genes)  IEA  
Protein XP_006488105.2 [sequence] [blastp]
XP_006488106.2 [sequence] [blastp]
XP_006488107.1 [sequence] [blastp]
XP_015388844.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 4,  nucl 1,  mito 1,  cysk_plas 1  (predict for XP_006488105.2)
cyto 4,  chlo 4,  nucl 1,  mito 1,  cysk_plas 1  (predict for XP_006488106.2)
cyto 4,  chlo 4,  nucl 1,  mito 1,  cysk_plas 1  (predict for XP_006488107.1)
cyto 4,  chlo 4,  nucl 1,  mito 1,  cysk_plas 1  (predict for XP_015388844.1)
Subcellular
localization
TargetP
chlo 6,  other 3  (predict for XP_006488105.2)
chlo 6,  other 3  (predict for XP_006488106.2)
chlo 6,  other 3  (predict for XP_006488107.1)
chlo 6,  other 3  (predict for XP_015388844.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102630187
ath-u.5
for
HDS
bra-r.6
for
103845475
ghi-r.1
for
107959038
ghi-r.1
for
121219946
ghi-r.1
for
107962783
bna-r.1
for
106362570
bna-r.1
for
106365752
bna-r.1
for
106371612
gma-u.5
for
100819481
gma-u.5
for
100801743
vvi-u.5
for
100257071
ppo-u.5
for
18098191
ppo-u.5
for
7489339
mtr-u.5
for
11413255
sly-u.5
for
HDS
sot-r.1
for
102591285
nta-r.1
for
107788162
nta-r.1
for
107796388
nta-r.1
for
107760467
osa-u.5
for
4329911
zma-u.5
for
542690
tae-r.2
for
123144749
tae-r.2
for
123137401
tae-r.2
for
123127643
hvu-r.1
for
123401503
sbi-r.1
for
8072432
bdi-r.1
for
100838320
cre-r.1
for
CHLRE_12g490350v5


Ortholog ID: 8207
Species cit ath bra ghi ghi ghi bna bna bna gma gma vvi ppo ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC102630187 HDS LOC103845475 LOC107959038 LOC121219946 LOC107962783 LOC106362570 LOC106365752 LOC106371612 LOC100819481 LOC100801743 LOC100257071 LOC18098191 LOC7489339 LOC11413255 HDS LOC102591285 LOC107788162 LOC107796388 LOC107760467 LOC4329911 LOC542690 LOC123144749 LOC123137401 LOC123127643 LOC123401503 LOC8072432 LOC100838320 CHLRE_12g490350v5
Function* 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like uncharacterized LOC542690 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00900 Terpenoid backbone biosynthesis 6
cit00480 Glutathione metabolism 3
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00051 Fructose and mannose metabolism 3
bra00260 Glycine, serine and threonine metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
ghi00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
ghi00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
bna00061 Fatty acid biosynthesis 2
bna00071 Fatty acid degradation 2
bna01212 Fatty acid metabolism 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 9
gma00920 Sulfur metabolism 2
gma01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 9
gma00270 Cysteine and methionine metabolism 4
gma00460 Cyanoamino acid metabolism 2
gma00920 Sulfur metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 5
ppo00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 6
mtr00906 Carotenoid biosynthesis 4
mtr00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 4
sly00906 Carotenoid biosynthesis 2
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 8
nta00071 Fatty acid degradation 3
nta01212 Fatty acid metabolism 3
nta00061 Fatty acid biosynthesis 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 5
nta00071 Fatty acid degradation 3
nta01212 Fatty acid metabolism 3
nta00061 Fatty acid biosynthesis 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 8
nta00071 Fatty acid degradation 3
nta01212 Fatty acid metabolism 3
nta00061 Fatty acid biosynthesis 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sbi01240 Biosynthesis of cofactors 2
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 9
cre01240 Biosynthesis of cofactors 5
cre00900 Terpenoid backbone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102630187 836181 103845475 107959038 121219946 107962783 106362570 106365752 106371612 100819481 100801743 100257071 18098191 7489339 11413255 543704 102591285 107788162 107796388 107760467 4329911 542690 123144749 123137401 123127643 123401503 8072432 100838320 5716700
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