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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G61670   orange protein 
 ath-r.7   AT5G61670   orange protein 
 ath-m.9   AT5G61670   orange protein 
 ath-e.2   AT5G61670   orange protein 
 ath-m.4.bio   AT5G61670   orange protein 
 ath-m.4.hor   AT5G61670   orange protein 
 ath-m.4.lig   AT5G61670   orange protein 
 ath-m.4.str   AT5G61670   orange protein 
 ath-m.4.tis   AT5G61670   orange protein 
 gma-u.5   100780118   protein ORANGE, chloroplastic 
 gma-u.5   100780032   OR-like zinc finger domain-containing protein 
 vvi-u.5   100266582   protein ORANGE, chloroplastic 
 ppo-u.5   18103854   protein ORANGE, chloroplastic 
 mtr-u.5   11435230   protein ORANGE, chloroplastic 
 sly-u.5   101244466   ORANGE protein-like 
 osa-u.5   4330168   protein ORANGE, chloroplastic 
 zma-u.5   100275801   uncharacterized LOC100275801 

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Top 50 coexpressed genes to AT5G61670 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G61670 (ath-u.5 coexpression data)

CoexMap"836289"


athAT5G61670 | Entrez gene ID : 836289      
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 9 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009661 [list] [network] chromoplast organization  (1 genes)  ISS  
GO:1904143 [list] [network] positive regulation of carotenoid biosynthetic process  (4 genes)  IMP  
GO:0016120 [list] [network] carotene biosynthetic process  (7 genes)  ISS  
GO:0050821 [list] [network] protein stabilization  (15 genes)  IGI IMP  
GO:0009704 [list] [network] de-etiolation  (18 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IGI IMP  
GO:0009416 [list] [network] response to light stimulus  (776 genes)  IEP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA  
GO:0009536 [list] [network] plastid  (5443 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA IPI  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_200975.1 [sequence] [blastp]
NP_974975.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  chlo 2,  mito 1,  E.R. 1,  pero 1,  cyto_mito 1  (predict for NP_200975.1)
plas 5,  chlo 2,  mito 1,  E.R. 1,  pero 1,  cyto_mito 1  (predict for NP_974975.1)
Subcellular
localization
TargetP
chlo 5,  mito 5  (predict for NP_200975.1)
chlo 5,  mito 5  (predict for NP_974975.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G61670

.
ath-r.7
for
AT5G61670

.
ath-m.9
for
AT5G61670

.
ath-e.2
for
AT5G61670

.
ath-m.4.bio
for
AT5G61670

.
ath-m.4.hor
for
AT5G61670

.
ath-m.4.lig
for
AT5G61670

.
ath-m.4.str
for
AT5G61670

.
ath-m.4.tis
for
AT5G61670

.
gma-u.5
for
100780118

.
gma-u.5
for
100780032

.
vvi-u.5
for
100266582

.
ppo-u.5
for
18103854

.
mtr-u.5
for
11435230

.
sly-u.5
for
101244466

.
osa-u.5
for
4330168

.
zma-u.5
for
100275801

.


Ortholog ID: 9186
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G61670 LOC100780032 LOC100780118 LOC101244466 LOC4330168 LOC100275801 LOC103837392 LOC100266582 LOC18103854 LOC11435230 LOC123144969 LOC123127877 LOC123402904 LOC107949685 LOC107953613 BNAA09G05780D BNAC09G05380D CHLRE_06g279500v5 LOC8077677 LOC102601642 LOC102629028 LOC100839704 LOC107819685 LOC107776698
Function* orange protein OR-like zinc finger domain-containing protein protein ORANGE, chloroplastic ORANGE protein-like protein ORANGE, chloroplastic uncharacterized LOC100275801 protein ORANGE, chloroplastic protein ORANGE, chloroplastic protein ORANGE, chloroplastic protein ORANGE, chloroplastic protein ORANGE, chloroplastic protein ORANGE, chloroplastic protein ORANGE, chloroplastic-like protein ORANGE-GREEN, chloroplastic protein ORANGE, chloroplastic protein ORANGE, chloroplastic protein ORANGE, chloroplastic uncharacterized protein protein ORANGE, chloroplastic uncharacterized LOC102601642 hypothetical protein protein ORANGE, chloroplastic protein ORANGE, chloroplastic uncharacterized LOC107776698
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma03083 Polycomb repressive complex 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 2
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 3
ppo04142 Lysosome 2
ppo00592 alpha-Linolenic acid metabolism 2
ppo00053 Ascorbate and aldarate metabolism 2
ppo00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 5
mtr00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00053 Ascorbate and aldarate metabolism 3
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 3
bna00260 Glycine, serine and threonine metabolism 2
bna00261 Monobactam biosynthesis 2
bna00270 Cysteine and methionine metabolism 2
bna00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 4
bna00260 Glycine, serine and threonine metabolism 2
bna00261 Monobactam biosynthesis 2
bna00270 Cysteine and methionine metabolism 2
bna00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 3
bdi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00480 Glutathione metabolism 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00480 Glutathione metabolism 2
nta00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836289 100780032 100780118 101244466 4330168 100275801 103837392 100266582 18103854 11435230 123144969 123127877 123402904 107949685 107953613 106366082 106451893 5720891 8077677 102601642 102629028 100839704 107819685 107776698
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