Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CSD1   copper/zinc superoxide dismutase 1 
 ath-r.7   CSD1   copper/zinc superoxide dismutase 1 
 ath-m.9   CSD1   copper/zinc superoxide dismutase 1 
 ath-e.2   CSD1   copper/zinc superoxide dismutase 1 
 ath-m.4.bio   CSD1   copper/zinc superoxide dismutase 1 
 ath-m.4.hor   CSD1   copper/zinc superoxide dismutase 1 
 ath-m.4.lig   CSD1   copper/zinc superoxide dismutase 1 
 ath-m.4.str   CSD1   copper/zinc superoxide dismutase 1 
 ath-m.4.tis   CSD1   copper/zinc superoxide dismutase 1 
 gma-u.5   100305732   superoxide dismutase [Cu-Zn] 
 gma-u.5   SOD1   superoxide dismutase [Cu-Zn] 
 vvi-u.5   100241809   superoxide dismutase [Cu-Zn] 
 ppo-u.5   18098883   superoxide dismutase [Cu-Zn] 2 
 ppo-u.5   7473899   superoxide dismutase [Cu-Zn] 
 mtr-u.5   11432262   superoxide dismutase [Cu-Zn] 
 sly-u.5   SODCC.1   superoxide dismutase [Cu-Zn] 1 
 osa-u.5   4332846   superoxide dismutase [Cu-Zn] 1-like 
 osa-u.5   4344210   superoxide dismutase [Cu-Zn] 2-like 
 zma-u.5   103639134   superoxide dismutase [Cu-Zn] 4AP 
 zma-u.5   542260   superoxide dismutase 2 
 zma-u.5   542722   superoxide dismutase 4 

close


Top 50 coexpressed genes to CSD1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to CSD1 (ath-u.5 coexpression data)

CoexMap"837405"


athCSD1 | Entrez gene ID : 837405    
Species ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 9 2 1 2 1 1 2 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04146 [list] [network] Peroxisome (90 genes)
GO BP
GO:0071457 [list] [network] cellular response to ozone  (3 genes)  IEP  
GO:0071280 [list] [network] cellular response to copper ion  (6 genes)  IEP  
GO:0019430 [list] [network] removal of superoxide radicals  (7 genes)  IC  
GO:0071493 [list] [network] cellular response to UV-B  (7 genes)  IEP  
GO:0071329 [list] [network] cellular response to sucrose stimulus  (10 genes)  IEP  
GO:0071484 [list] [network] cellular response to light intensity  (13 genes)  IEP  
GO:0046688 [list] [network] response to copper ion  (27 genes)  IEP  
GO:0010039 [list] [network] response to iron ion  (28 genes)  IEP  
GO:0010193 [list] [network] response to ozone  (36 genes)  IEP  
GO:0034599 [list] [network] cellular response to oxidative stress  (42 genes)  IEP  
GO:0071472 [list] [network] cellular response to salt stress  (42 genes)  IEP  
GO:0035195 [list] [network] miRNA-mediated post-transcriptional gene silencing  (70 genes)  IEP  
GO:0042742 [list] [network] defense response to bacterium  (363 genes)  IEP  
GO:0006979 [list] [network] response to oxidative stress  (384 genes)  IEP TAS  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IEP  
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA IDA TAS  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM NAS  
GO MF
GO:0004784 [list] [network] superoxide dismutase activity  (10 genes)  IDA TAS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001077494.1 [sequence] [blastp]
NP_172360.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 10  (predict for NP_001077494.1)
cyto 10  (predict for NP_172360.1)
Subcellular
localization
TargetP
other 6  (predict for NP_001077494.1)
other 6  (predict for NP_172360.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CSD1

.
ath-r.7
for
CSD1

.
ath-m.9
for
CSD1

.
ath-e.2
for
CSD1

.
ath-m.4.bio
for
CSD1

.
ath-m.4.hor
for
CSD1

.
ath-m.4.lig
for
CSD1

.
ath-m.4.str
for
CSD1

.
ath-m.4.tis
for
CSD1

.
gma-u.5
for
100305732

.
gma-u.5
for
SOD1

.
vvi-u.5
for
100241809

.
ppo-u.5
for
18098883

.
ppo-u.5
for
7473899

.
mtr-u.5
for
11432262

.
sly-u.5
for
SODCC.1

.
osa-u.5
for
4332846

.
osa-u.5
for
4344210

.
zma-u.5
for
103639134

.
zma-u.5
for
542260

.
zma-u.5
for
542722

.


Ortholog ID: 6121
Species ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sbi sot cit bdi nta nta
Symbol CSD1 SOD1 LOC100305732 SODCC.1 LOC4332846 LOC4344210 LOC542722 LOC542260 LOC103843378 LOC103871624 LOC100241809 LOC18098883 LOC7473899 LOC11432262 LOC123051671 LOC123043809 LOC123395626 LOC107937143 LOC107893157 LOC106411572 LOC106377019 LOC110431820 LOC110432872 LOC102577750 LOC102628406 LOC100840092 LOC107790449 LOC107774639
Function* copper/zinc superoxide dismutase 1 superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] 1 superoxide dismutase [Cu-Zn] 1-like superoxide dismutase [Cu-Zn] 2-like superoxide dismutase 4 superoxide dismutase 2 superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] 1 superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] 4A superoxide dismutase [Cu-Zn] 4A superoxide dismutase [Cu-Zn] 4A-like superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] 1 superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] 4A superoxide dismutase [Cu-Zn] 2 Cu/Zn-superoxide dismutase superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn] 4A superoxide dismutase [Cu-Zn] superoxide dismutase [Cu-Zn]
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly03018 RNA degradation 2
sly04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00010 Glycolysis / Gluconeogenesis 4
osa01230 Biosynthesis of amino acids 4
osa04146 Peroxisome 4
osa01200 Carbon metabolism 3
osa00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00010 Glycolysis / Gluconeogenesis 6
osa01200 Carbon metabolism 4
osa01230 Biosynthesis of amino acids 4
osa04146 Peroxisome 4
osa00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04146 Peroxisome 4
zma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04146 Peroxisome 4
zma00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 6
bra04146 Peroxisome 3
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 6
bra04146 Peroxisome 3
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04146 Peroxisome 3
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04146 Peroxisome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04146 Peroxisome 4
ppo00860 Porphyrin metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 5
mtr04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 5
tae00030 Pentose phosphate pathway 4
tae01200 Carbon metabolism 4
tae00480 Glutathione metabolism 4
tae00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 6
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 3
hvu04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00010 Glycolysis / Gluconeogenesis 4
sbi00710 Carbon fixation by Calvin cycle 4
sbi01200 Carbon metabolism 4
sbi01230 Biosynthesis of amino acids 4
sbi00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 5
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
sbi01230 Biosynthesis of amino acids 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 3
sot04146 Peroxisome 2
sot04141 Protein processing in endoplasmic reticulum 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 14
cit04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 5
nta00020 Citrate cycle (TCA cycle) 3
nta00785 Lipoic acid metabolism 3
nta01200 Carbon metabolism 3
nta01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 5
nta01210 2-Oxocarboxylic acid metabolism 5
nta00350 Tyrosine metabolism 4
nta00190 Oxidative phosphorylation 4
nta00020 Citrate cycle (TCA cycle) 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837405 100499991 100305732 544054 4332846 4344210 542722 542260 103843378 103871624 100241809 18098883 7473899 11432262 123051671 123043809 123395626 107937143 107893157 106411572 106377019 110431820 110432872 102577750 102628406 100840092 107790449 107774639
The preparation time of this page was 0.1 [sec].