ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	LEC1	Histone superfamily protein
ath-r.7	LEC1	Histone superfamily protein
ath-m.9	LEC1	Histone superfamily protein
ath-e.2	LEC1	Histone superfamily protein
ath-m.4.bio	LEC1	Histone superfamily protein
ath-m.4.hor	LEC1	Histone superfamily protein
ath-m.4.lig	LEC1	Histone superfamily protein
ath-m.4.str	LEC1	Histone superfamily protein
ath-m.4.tis	LEC1	Histone superfamily protein
ath-u.5	NF-YB6	nuclear factor Y, subunit B6
bra-r.6	103839510	nuclear transcription factor Y subunit B-6
bna-r.1	106454772	nuclear transcription factor Y subunit B-9
bna-r.1	106432034	nuclear transcription factor Y subunit B-6
bna-r.1	106425624	nuclear transcription factor Y subunit B-9-like
ghi-r.1	121229421	nuclear transcription factor Y subunit B-6
cit-r.1	102610438	nuclear transcription factor Y subunit B-6
gma-u.5	547959	nuclear transcription factor Y subunit B-6
gma-u.5	LEC1-B	nuclear transcription factor Y subunit B-6-like
vvi-u.5	100855401	nuclear transcription factor Y subunit B-6
zma-u.5	103654015	nuclear transcription factor Y subunit B-2
zma-u.5	542498	leafy cotyledon
bdi-r.1	100830019	nuclear transcription factor Y subunit B-3

Annotation

functional annotation

KEGG

GO BP

GO:0045723 [list] [network] positive regulation of fatty acid biosynthetic process	(7 genes)	IMP
GO:0009785 [list] [network] blue light signaling pathway	(22 genes)	IMP
GO:0010262 [list] [network] somatic embryogenesis	(27 genes)	IMP
GO:0009738 [list] [network] abscisic acid-activated signaling pathway	(111 genes)	IMP
GO:0040029 [list] [network] epigenetic regulation of gene expression	(174 genes)	IMP
GO:0045893 [list] [network] positive regulation of DNA-templated transcription	(262 genes)	IDA IMP
GO:0009793 [list] [network] embryo development ending in seed dormancy	(569 genes)	IMP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0003682 [list] [network] chromatin binding	(103 genes)	IDA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_173616.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 1, pero 1, cyto 1, mito 1

(predict for NP_173616.2)

Subcellular
localization
TargetP

other 5, chlo 4

(predict for NP_173616.2)

Gene expression

All samples

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for LEC1	ath-r.7 for LEC1	ath-m.9 for LEC1	ath-e.2 for LEC1	ath-m.4.bio for LEC1	ath-m.4.hor for LEC1	ath-m.4.lig for LEC1	ath-m.4.str for LEC1	ath-m.4.tis for LEC1	ath-u.5 for NF-YB6	bra-r.6 for 103839510	bna-r.1 for 106454772	bna-r.1 for 106432034	bna-r.1 for 106425624	ghi-r.1 for 121229421	cit-r.1 for 102610438	gma-u.5 for 547959	gma-u.5 for LEC1-B	vvi-u.5 for 100855401	zma-u.5 for 103654015	zma-u.5 for 542498	bdi-r.1 for 100830019