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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   ATE2F2   winged-helix DNA-binding transcription factor family protein 
 ath-r.7   ATE2F2   winged-helix DNA-binding transcription factor family protein 
 ath-m.9   ATE2F2   winged-helix DNA-binding transcription factor family protein 
 ath-e.2   ATE2F2   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.bio   ATE2F2   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.hor   ATE2F2   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.lig   ATE2F2   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.str   ATE2F2   winged-helix DNA-binding transcription factor family protein 
 ath-m.4.tis   ATE2F2   winged-helix DNA-binding transcription factor family protein 
 gma-u.5   100797301   transcription factor E2FC 
 vvi-u.5   100247139   transcription factor E2FC 
 mtr-u.5   11428881   transcription factor E2FC 
 sly-u.5   101248386   transcription factor E2FC 

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Top 50 coexpressed genes to ATE2F2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ATE2F2 (ath-u.5 coexpression data)

CoexMap"841202"


athATE2F2 | Entrez gene ID : 841202      
Species ath gma vvi mtr sly sot hvu tae cit sbi ppo zma ghi cre bna nta bdi bra osa
Paralog 9 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042770 [list] [network] signal transduction in response to DNA damage  (3 genes)  IMP  
GO:0051782 [list] [network] negative regulation of cell division  (8 genes)  IMP  
GO:0042023 [list] [network] DNA endoreduplication  (21 genes)  IMP  
GO:0043068 [list] [network] positive regulation of programmed cell death  (34 genes)  IMP  
GO:0019760 [list] [network] glucosinolate metabolic process  (97 genes)  IMP  
GO:0051301 [list] [network] cell division  (192 genes)  IMP  
GO:0000902 [list] [network] cell morphogenesis  (393 genes)  IMP  
GO CC
GO:0070176 [list] [network] DRM complex  (15 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA IDA ISM  
GO MF
GO:0046982 [list] [network] protein heterodimerization activity  (86 genes)  IPI  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IDA ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001185166.1 [sequence] [blastp]
NP_175222.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  mito 2,  chlo 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001185166.1)
nucl 4,  cyto 3,  mito 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_175222.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001185166.1)
chlo 8  (predict for NP_175222.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
ATE2F2

.
ath-r.7
for
ATE2F2

.
ath-m.9
for
ATE2F2

.
ath-e.2
for
ATE2F2

.
ath-m.4.bio
for
ATE2F2

.
ath-m.4.hor
for
ATE2F2

.
ath-m.4.lig
for
ATE2F2

.
ath-m.4.str
for
ATE2F2

.
ath-m.4.tis
for
ATE2F2

.
gma-u.5
for
100797301

.
vvi-u.5
for
100247139

.
mtr-u.5
for
11428881

.
sly-u.5
for
101248386

.


Ortholog ID: 14065
Species ath gma sly bra vvi mtr bna sot cit nta
Symbol ATE2F2 LOC100797301 LOC101248386 LOC103833054 LOC100247139 LOC11428881 LOC106429362 LOC102594398 LOC102625601 LOC107781702
Function* winged-helix DNA-binding transcription factor family protein transcription factor E2FC transcription factor E2FC transcription factor E2FC transcription factor E2FC transcription factor E2FC transcription factor E2FC transcription factor E2FC transcription factor E2FC transcription factor E2FC-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03420 Nucleotide excision repair 4
ath03430 Mismatch repair 3
ath03440 Homologous recombination 3
ath03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 5
sly00010 Glycolysis / Gluconeogenesis 4
sly01200 Carbon metabolism 4
sly00710 Carbon fixation by Calvin cycle 3
sly03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 9
sot03410 Base excision repair 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841202 100797301 101248386 103833054 100247139 11428881 106429362 102594398 102625601 107781702
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