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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G54310   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-r.7   AT1G54310   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.9   AT1G54310   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-e.2   AT1G54310   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.bio   AT1G54310   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.hor   AT1G54310   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.lig   AT1G54310   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.str   AT1G54310   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.tis   AT1G54310   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 bra-r.6   103869113   ribosomal RNA large subunit methyltransferase I 
 bna-r.1   106391517   ribosomal RNA large subunit methyltransferase I 
 bna-r.1   111200986   ribosomal RNA large subunit methyltransferase I-like 
 bna-r.1   106427503   ribosomal RNA large subunit methyltransferase I-like 
 ghi-r.1   107953614   ribosomal RNA large subunit methyltransferase I 
 ghi-r.1   107913196   ribosomal RNA large subunit methyltransferase I 
 cit-r.1   102626476   uncharacterized LOC102626476 
 gma-u.5   100796633   ribosomal RNA large subunit methyltransferase I 
 vvi-u.5   100262230   uncharacterized LOC100262230 
 ppo-u.5   7481605   uncharacterized LOC7481605 
 mtr-u.5   120577709   ribosomal RNA large subunit methyltransferase I 
 sot-r.1   102602589   ribosomal RNA large subunit methyltransferase I 
 nta-r.1   107788632   uncharacterized LOC107788632 
 nta-r.1   107760018   uncharacterized LOC107760018 
 osa-u.5   4328457   uncharacterized LOC4328457 
 zma-u.5   100382848   uncharacterized LOC100382848 
 tae-r.2   123136625   ribosomal RNA large subunit methyltransferase I 
 tae-r.2   123144135   ribosomal RNA large subunit methyltransferase I 
 tae-r.2   123132550   ribosomal RNA large subunit methyltransferase I 
 hvu-r.1   123400982   ribosomal RNA large subunit methyltransferase I 
 sbi-r.1   8077190   ribosomal RNA large subunit methyltransferase I 
 bdi-r.1   100830113   ribosomal RNA large subunit methyltransferase I 
 cre-r.1   CHLRE_16g649400v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G54310 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G54310 (ath-u.5 coexpression data)

CoexMap"841872"


athAT1G54310 | Entrez gene ID : 841872      
Species ath bra bna ghi cit gma vvi ppo mtr sot nta osa zma tae hvu sbi bdi cre sly
Paralog 9 1 3 2 1 1 1 1 1 1 2 1 1 3 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0008168 [list] [network] methyltransferase activity  (188 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1764 genes)  IEA  
Protein NP_564655.1 [sequence] [blastp]
NP_974023.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 4,  vacu 1,  nucl 1,  mito 1,  plas 1,  extr 1,  nucl_plas 1,  E.R._vacu 1  (predict for NP_564655.1)
chlo 10  (predict for NP_974023.1)
Subcellular
localization
TargetP
mito 6  (predict for NP_564655.1)
mito 6  (predict for NP_974023.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G54310
ath-r.7
for
AT1G54310
ath-m.9
for
AT1G54310
ath-e.2
for
AT1G54310
ath-m.4.bio
for
AT1G54310
ath-m.4.hor
for
AT1G54310
ath-m.4.lig
for
AT1G54310
ath-m.4.str
for
AT1G54310
ath-m.4.tis
for
AT1G54310
bra-r.6
for
103869113
bna-r.1
for
106391517
bna-r.1
for
111200986
bna-r.1
for
106427503
ghi-r.1
for
107953614
ghi-r.1
for
107913196
cit-r.1
for
102626476
gma-u.5
for
100796633
vvi-u.5
for
100262230
ppo-u.5
for
7481605
mtr-u.5
for
120577709
sot-r.1
for
102602589
nta-r.1
for
107788632
nta-r.1
for
107760018
osa-u.5
for
4328457
zma-u.5
for
100382848
tae-r.2
for
123136625
tae-r.2
for
123144135
tae-r.2
for
123132550
hvu-r.1
for
123400982
sbi-r.1
for
8077190
bdi-r.1
for
100830113
cre-r.1
for
CHLRE_16g649400v5


Ortholog ID: 11090
Species ath bra bna bna bna ghi ghi cit gma vvi ppo mtr sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT1G54310 LOC103869113 LOC106391517 LOC111200986 LOC106427503 LOC107953614 LOC107913196 LOC102626476 LOC100796633 LOC100262230 LOC7481605 LOC120577709 LOC102602589 LOC107788632 LOC107760018 LOC4328457 LOC100382848 LOC123136625 LOC123144135 LOC123132550 LOC123400982 LOC8077190 LOC100830113 CHLRE_16g649400v5
Function* S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I-like ribosomal RNA large subunit methyltransferase I-like ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I uncharacterized LOC102626476 ribosomal RNA large subunit methyltransferase I uncharacterized LOC100262230 uncharacterized LOC7481605 ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I uncharacterized LOC107788632 uncharacterized LOC107760018 uncharacterized LOC4328457 uncharacterized LOC100382848 ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00290 Valine, leucine and isoleucine biosynthesis 6
bna00770 Pantothenate and CoA biosynthesis 6
bna01210 2-Oxocarboxylic acid metabolism 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 3
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
nta04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
sbi00330 Arginine and proline metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00240 Pyrimidine metabolism 2
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841872 103869113 106391517 111200986 106427503 107953614 107913196 102626476 100796633 100262230 7481605 120577709 102602589 107788632 107760018 4328457 100382848 123136625 123144135 123132550 123400982 8077190 100830113 5723733
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