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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SKIP   chromatin protein family 
 ath-r.7   SKIP   chromatin protein family 
 ath-m.9   SKIP   chromatin protein family 
 ath-e.2   SKIP   chromatin protein family 
 ath-m.4.bio   SKIP   chromatin protein family 
 ath-m.4.hor   SKIP   chromatin protein family 
 ath-m.4.lig   SKIP   chromatin protein family 
 ath-m.4.str   SKIP   chromatin protein family 
 ath-m.4.tis   SKIP   chromatin protein family 
 bra-r.6   103832171   SNW/SKI-interacting protein 
 bna-r.1   106354626   SNW/SKI-interacting protein 
 bna-r.1   106392163   SNW/SKI-interacting protein 
 ghi-r.1   107962732   SNW/SKI-interacting protein A 
 ghi-r.1   107899967   SNW/SKI-interacting protein A 
 cit-r.1   102606884   SNW/SKI-interacting protein 
 gma-u.5   732608   GAMYB-binding protein 
 gma-u.5   100783576   SNW/SKI-interacting protein A 
 vvi-u.5   100245841   SNW/SKI-interacting protein A 
 ppo-u.5   112327869   SNW/SKI-interacting protein 
 ppo-u.5   7488937   SNW/SKI-interacting protein 
 mtr-u.5   11415940   SNW/SKI-interacting protein 
 sly-u.5   101256945   SNW/SKI-interacting protein A 
 sot-r.1   102602288   SNW/SKI-interacting protein 
 nta-r.1   107787398   SNW/SKI-interacting protein A-like 
 nta-r.1   107784325   SNW/SKI-interacting protein A 
 nta-r.1   107761648   SNW/SKI-interacting protein A-like 
 osa-u.5   4330796   SNW/SKI-interacting protein A-like 
 zma-u.5   100286002   pre-mRNA-splicing factor prp45 
 tae-r.2   123128444   SNW/SKI-interacting protein A 
 tae-r.2   123145568   SNW/SKI-interacting protein A 
 hvu-r.1   123406214   SNW/SKI-interacting protein A-like 
 sbi-r.1   8075185   SNW/SKI-interacting protein 
 bdi-r.1   100840735   SNW/SKI-interacting protein A 
 cre-r.1   CHLRE_01g051100v5   uncharacterized protein 

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Top 50 coexpressed genes to SKIP (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SKIP (ath-u.5 coexpression data)

CoexMap"844055"


athSKIP | Entrez gene ID : 844055      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 2 1 1 1 3 1 1 2 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0010555 [list] [network] response to mannitol  (27 genes)  IEP  
GO:0042752 [list] [network] regulation of circadian rhythm  (59 genes)  IGI  
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (101 genes)  IMP  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (112 genes)  IPI  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (186 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (195 genes)  IMP ISS  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IDA  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IEP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO CC
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA IDA ISM  
GO MF
GO:0036002 [list] [network] pre-mRNA binding  (6 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031291.1 [sequence] [blastp]
NP_001185416.1 [sequence] [blastp]
NP_565151.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for NP_001031291.1)
nucl 9,  cyto_nucl 5  (predict for NP_001185416.1)
nucl 9,  cyto_nucl 5  (predict for NP_565151.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001031291.1)
other 8  (predict for NP_001185416.1)
other 8  (predict for NP_565151.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SKIP
ath-r.7
for
SKIP
ath-m.9
for
SKIP
ath-e.2
for
SKIP
ath-m.4.bio
for
SKIP
ath-m.4.hor
for
SKIP
ath-m.4.lig
for
SKIP
ath-m.4.str
for
SKIP
ath-m.4.tis
for
SKIP
bra-r.6
for
103832171
bna-r.1
for
106354626
bna-r.1
for
106392163
ghi-r.1
for
107962732
ghi-r.1
for
107899967
cit-r.1
for
102606884
gma-u.5
for
732608
gma-u.5
for
100783576
vvi-u.5
for
100245841
ppo-u.5
for
112327869
ppo-u.5
for
7488937
mtr-u.5
for
11415940
sly-u.5
for
101256945
sot-r.1
for
102602288
nta-r.1
for
107787398
nta-r.1
for
107784325
nta-r.1
for
107761648
osa-u.5
for
4330796
zma-u.5
for
100286002
tae-r.2
for
123128444
tae-r.2
for
123145568
hvu-r.1
for
123406214
sbi-r.1
for
8075185
bdi-r.1
for
100840735
cre-r.1
for
CHLRE_01g051100v5


Ortholog ID: 8774
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta nta osa zma tae tae hvu sbi bdi cre
Symbol SKIP LOC103832171 LOC106354626 LOC106392163 LOC107962732 LOC107899967 LOC102606884 LOC732608 LOC100783576 LOC100245841 LOC112327869 LOC7488937 LOC11415940 LOC101256945 LOC102602288 LOC107787398 LOC107784325 LOC107812688 LOC4330796 LOC100286002 LOC123128444 LOC123145568 LOC123406214 LOC8075185 LOC100840735 CHLRE_01g051100v5
Function* chromatin protein family SNW/SKI-interacting protein SNW/SKI-interacting protein SNW/SKI-interacting protein SNW/SKI-interacting protein A SNW/SKI-interacting protein A SNW/SKI-interacting protein GAMYB-binding protein SNW/SKI-interacting protein A SNW/SKI-interacting protein A SNW/SKI-interacting protein SNW/SKI-interacting protein SNW/SKI-interacting protein SNW/SKI-interacting protein A SNW/SKI-interacting protein SNW/SKI-interacting protein A-like SNW/SKI-interacting protein A SNW/SKI-interacting protein A SNW/SKI-interacting protein A-like pre-mRNA-splicing factor prp45 SNW/SKI-interacting protein A SNW/SKI-interacting protein A SNW/SKI-interacting protein A-like SNW/SKI-interacting protein SNW/SKI-interacting protein A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra04120 Ubiquitin mediated proteolysis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
gma03250 Viral life cycle - HIV-1 4
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 5
gma03040 Spliceosome 5
gma03250 Viral life cycle - HIV-1 4
gma00290 Valine, leucine and isoleucine biosynthesis 2
gma00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta00970 Aminoacyl-tRNA biosynthesis 2
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 4
osa03040 Spliceosome 3
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
tae03440 Homologous recombination 2
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
cre00970 Aminoacyl-tRNA biosynthesis 4
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844055 103832171 106354626 106392163 107962732 107899967 102606884 732608 100783576 100245841 112327869 7488937 11415940 101256945 102602288 107787398 107784325 107812688 4330796 100286002 123128444 123145568 123406214 8075185 100840735 5715751
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